Idiomarina sp. X4: CWC33_00295
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Entry
CWC33_00295 CDS
T05226
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
idi
Idiomarina sp. X4
Pathway
idi03410
Base excision repair
idi03430
Mismatch repair
idi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CWC33_00295 (recJ)
03430 Mismatch repair
CWC33_00295 (recJ)
03440 Homologous recombination
CWC33_00295 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idi03400
]
CWC33_00295 (recJ)
DNA repair and recombination proteins [BR:
idi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CWC33_00295 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CWC33_00295 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWC33_00295 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ATZ72232
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Position
complement(47838..49544)
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AA seq
568 aa
AA seq
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MTDYTIRRYPTVSDDFLPQNVPPLLRQIYARRGVSNEQELSLNAAGLTHFSSLKGIDSAV
DILADALEKQSSICICGDFDADGATSSALMVSALKAFGFSNVGYRVPNRMTDGYGLSVSM
VEELAAREVKVIVTVDNGIAAHEAIGRASELNIRVIVTDHHLPAETLPSAAAIVNPNQPG
CPFPSKNLAGVGVAFYVLLALRAHLREKQATPNLADWLDLVALGTVADVVPLDYNNRILV
HQGLARIKCGLCRPGIKALLEVSNRNASQLNASDLGFALAPRINAAGRLDDISLGIECLL
AEKEHAQRLAQQLNELNLQRRNIESDMREHAEAAVAKLQFDTGQVPDLVTLYQPDWHAGV
IGIVAGRVKEQVNRPVIALAHEDDDILKGSARSVSGLHMRDLLERVHTLEPNIMERFGGH
AMAAGLTLKKANLQRFSELAQAVAQEWLTEEQKQRVYWSDGELTLPELTINNVDMLQNAG
PWGQHFPEPMFDGEFDIVDQRIVGEKHLKCVLRHPQGDVLDAIAFNVDTNEWPNNSVQRV
ELLYKPQLNHFRGKTSVQLLVEQIRAIR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacagattacacgatacgtcggtatccgacggttagtgatgactttttgccgcaaaac
gtcccaccgttattgcggcaaatttatgcacgccgcggtgtcagtaacgaacaggagctt
tctcttaacgctgccggactcacacacttttcaagtttaaaaggtattgattctgcagtt
gatatactggcagacgcactcgaaaagcagtcatctatttgtatttgcggcgactttgac
gcagacggagcgaccagttcagcacttatggtgtcggcgttaaaagccttcgggttttcg
aatgtggggtatcgcgttccgaacagaatgacggacggctatggcttatcggtatcaatg
gttgaagagctggctgccagagaggtaaaggtcattgtcaccgttgataatggaatagct
gctcacgaggctatcggacgggcaagcgaactgaacataagagtcatagtaaccgatcac
catttaccggcagaaacactgcctagcgccgccgctattgttaatccgaaccagccaggt
tgtccgttccctagtaaaaatctggcgggtgtgggcgttgccttctacgtattgctggcg
ctgcgtgcccacttaagagagaaacaggcgacgccaaatttagcggattggctcgatttg
gtggcgttggggactgtcgccgatgttgtgccgcttgattacaataaccgcattttggtc
catcaggggctcgcacgaattaagtgcggactttgtagaccaggcattaaggcattgttg
gaagtctctaaccggaatgcgtcgcagctgaatgccagtgatttgggtttcgcattggct
cctagaattaatgcagcagggcggctggatgatatcagcttaggtattgagtgtctgttg
gccgaaaaggagcacgcacagaggctagcgcagcagctgaacgagcttaacctgcagcgc
agaaatattgaatccgatatgagagagcatgctgaagctgccgttgctaaattgcagttt
gacaccggtcaagttcctgatttagtcaccctgtatcagcccgactggcatgctggtgtt
atcggtatcgttgcaggtcgtgtgaaggaacaagtgaaccgtccggttattgcgctggcg
catgaagacgacgatatattgaaaggctctgcacgttctgtcagtggtttacacatgcga
gacttattggagcgtgttcacacccttgaacccaatattatggagcgctttggcggtcac
gccatggcggcgggcttaacgctgaaaaaagcaaacttgcagcgcttttcagagcttgca
caagccgtcgcccaagagtggcttacggaagagcaaaaacagcgtgtctattggtctgat
ggcgagctgacattaccggaattgacgataaacaatgtcgacatgttgcaaaacgccggt
ccatggggccagcattttcctgagccgatgtttgacggtgagtttgatatcgttgaccaa
cgcattgttggcgagaagcatttaaaatgcgtgcttaggcacccccagggcgatgtctta
gacgctattgcatttaatgtcgataccaacgaatggccaaataatagcgttcagcgcgtt
gagttgttatacaagccgcaattaaatcacttccgcggtaaaacttctgtgcagttgctg
gtagagcaaattcgcgcaatacgttaa
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