Idiomarina sp. X4: CWC33_03965
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Entry
CWC33_03965 CDS
T05226
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWC33_03965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idi03021
]
CWC33_03965 (rpoB)
03400 DNA repair and recombination proteins [BR:
idi03400
]
CWC33_03965 (rpoB)
Enzymes [BR:
idi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWC33_03965 (rpoB)
Transcription machinery [BR:
idi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWC33_03965 (rpoB)
DNA repair and recombination proteins [BR:
idi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWC33_03965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ATZ72902
LinkDB
All DBs
Position
complement(833293..837321)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVDPDANNGLEAAFRSVFPIA
SYSGNAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNARVIPYR
GSWLDFEFDPKDNVFVRIDRRRKLPASIILRALEYSTEEILDMFFETTYFEILKTKVKME
LVPERLRGETAKFDIKGTDGEVLVEKGRRITARHIRQLEKLDIKEMDVPTEYMVGKVLAK
DYADKKTGEVIGHANDVLTLELIAELSEAGIKKIETLFVNDLDHGPYMSETLRVDSTTNR
LEALVEIYRMMRPGEPPTREAAEALFDNLFFSDERYDLSTVGRMKFNRRLGRDDLSGDNT
LSKEDIIDVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSSFSRTNEYGFLETPYRRIEDGVV
TDEVDYLSAIEEGNYVIAQANVALNDKGELTEDLVPCRHKNEFTLMSKEQVQYMDVAPQQ
IVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVDSGVTVVAK
RGGVVDYVDASRIVVKVNEEEMVPGEAGIDIYNLTKYTRSNQNTCINQKPTVNPGEPVTR
GDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILISERVAQEDRLTTIHIQELNCV
ARDTKLGAEEITSDIPNVGESALGKLDEAGVVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEMQLAKVKKD
LTEEFKILEEGIYNRARNLLLANGFDEAKLASIDRKNWLTQDLGSEDAQAQLEQIAEQYQ
QISDDFDTKYENKRRKITQGDDLAPGVLKIVKVYLAVKRSIQPGDKLAGRHGNKGVISTI
IPVEDMPHDDEGNPVDIVLNPLGVPSRMNIGQVLETHLGMAARGIGSKIDKMLKQQRAMK
DLRDFLQQVYDLGECRQKVDISEFSDDEVMRLAGNLKAGLPTATPVFDGAVEEEIKELLK
LADLPESGQIPLFDGRTGEKFERDVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDNNLQMEAGMP
ESFNVLLKEIRSLGINIELEQN
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcctactctgagaaaaaacgtattcgtaaggactttggtaaacgaccgcag
gtcttagaagtgccttatttgctgtctatgcagcttgattcatttaagaaatttattgaa
gtcgatccagacgccaataacggcttggaagcggcttttcgttcggtttttcctattgcc
agctactcaggtaatgcggaactgcagtacgtcagttatcacatgggtgagccggcattt
gacgttgaagaatgtcaaattcgtggtattacctactcagcacctctgcgtgtgaaactg
cgtctggtactgtttgataaagaagcagcagccggaacggttaaagacattaaagagcaa
gaagtgtacatgggcgaaattccgttaatgacagaaaacggaactttcgttatcaatggt
acagaacgagtaatcgtttctcagcttcaccgctctccgggtgttttctttgaccatgat
aaaggtaaatcacactcatcaggtaaagttctgtataacgcacgagttatcccttaccgt
ggctcgtggttagactttgagtttgatcctaaagacaacgtgtttgttcgtatcgaccgt
cgccgtaagttgccggcgtctattattcttcgtgcgcttgaatacagcactgaagaaatt
ctcgatatgttcttcgaaacaacctactttgaaatcttgaaaaccaaagtcaagatggag
ttggtgccggagcgtcttcgtggtgaaactgccaagttcgacattaaaggtaccgatggc
gaagtattggttgaaaaaggccgtcgtattaccgcacgtcatattcgtcagttagaaaaa
ctcgacattaaagaaatggacgtgccgactgaatacatggtcggaaaagtattagcaaaa
gactacgcagataagaaaacaggcgaagtcattggccacgcaaacgacgtattaacgctt
gagttgattgcggaattaagcgaagccggaattaagaaaattgaaacgttattcgtgaat
gacctggatcacggtccatacatgagcgaaacgctgcgcgtggattcaaccactaatcgc
ttggaagcgttggttgaaatctatcgtatgatgcgtccgggtgaaccgccgacgcgcgaa
gcagcagaagcgttattcgataacttattctttagcgatgagcgttatgacttgtcgacc
gttggtcgtatgaagtttaatcgccgtttaggtcgagatgatctaagtggagataatacg
ctttctaaagaagacattatcgatgttatgaagaagcttatcgagatccgaaatggtctt
gatgaagttgatgacattgaccacttgggtaaccgtcgtatccgttctgttggcgagatg
gcagaaaaccaattccgtgttggccttgttcgtgttgaacgcgcggttaaagagcgtttg
tcgttaggcgacctggacaataccatgccacaggaccttatcaatgcgaagcctattagt
gccgcagtgaaagagttcttcggttcaagtcagttgtctcagttcatggatcaaaacaac
ccactgtcagaagtgacgcacaaacgccgtatttctgcgttaggtccgggtggtttgacg
cgtgagcgagcaggctttgaagttcgagacgtacacccgactcactacggtcgtttgtgt
ccaatcgaaacccctgaaggtccgaacatcggtttgattaactcactgtcgagtttctcc
agaacgaacgagtacggtttcctggaaacaccttaccgtcgtattgaagacggtgttgtc
accgacgaagttgactacttgtcagccattgaagaaggcaactatgttatcgctcaggcg
aacgtagcgcttaatgacaaaggtgagttaaccgaagacttagtaccttgtcgtcacaaa
aacgaatttacattgatgagcaaagagcaagttcagtatatggacgttgctcctcagcaa
atcgtgtcaattgcagcaagcatgatcccattccttgaacacgatgatgcgaaccgtgca
ttgatgggttcaaacatgcaacgtcaggcagtaccaacgttacgtgcagacaagccgtta
gtcggtaccggtatcgaacgcactatcgccgttgactcgggcgttaccgttgtcgctaaa
cgtggtggtgttgtcgactatgttgatgcaagccgtatcgtggttaaagtaaatgaagaa
gagatggtgccgggcgaagcgggcatcgacatttacaacttaactaagtacacacgctct
aaccaaaatacgtgtattaaccaaaaaccaacggttaatcctggtgagccggtaacccgt
ggcgacgtattggcagatggtccatcgacagacttaggtgaattggcactgggtcaaaac
ctacgtgtcgcgttcatgccgtggaatggttacaactttgaggattcaatccttatctct
gagcgtgttgcgcaagaagatcgtttaaccactatccacattcaagagctgaactgtgtt
gctcgtgataccaaactgggtgctgaagaaatcacttcagatattccaaacgttggtgaa
tcagcgcttggtaagcttgatgaagctggtgttgtatacgttggtgccgaagttaaaggc
ggcgacattctggttggtaaagtaacgccaaaaggcgaaacgcagctgacgccagaagag
aagcttttgagagcaatctttggtgagaaggcgtcggacgttaaagacagttctttacgc
gttcctaatggtgtgaacggtaccgttattgacgtacaagtctttactcgcgatggcgtt
gaaaaagataaacgcgcagtcgctatcgaagagatgcaactggcgaaggttaagaaagac
ctgaccgaagagtttaaaattcttgaagaaggtatttataaccgtgcacgcaacttgttg
cttgcgaatggtttcgacgaagcgaagctagcgagtattgatcgtaaaaactggctaact
caggacttaggttctgaagatgcgcaagcacagttagagcagatcgcagagcaataccag
caaatcagcgatgatttcgatacgaagtacgaaaacaagcgccgtaaaatcactcaaggt
gatgatttagcgcctggcgtactgaagattgtaaaagtttacttggcggttaagcgtagc
attcagccgggtgacaagttagcaggtcgtcacggtaacaaaggtgttatctctactatc
attcctgttgaggatatgcctcacgatgatgaaggtaacccggtcgatatcgtattgaac
cctctgggtgtaccatcgcggatgaacatcggtcaggtgttggaaacacacttgggcatg
gcggctcgcggtattggtagcaagatagacaagatgctgaagcagcagcgcgcaatgaaa
gatctgcgtgacttcttacagcaagtttatgacctgggtgagtgccgtcagaaagtagac
atcagtgagttctctgatgacgaagtgatgcgcttagcgggtaacctgaaagccggtctg
ccaacggccacaccagtattcgacggtgcggttgaagaagaaattaaagagcttctgaaa
ctggcggatttacctgagtcaggtcagataccactatttgacggtcgtactggtgagaaa
tttgagcgtgatgtaaccgtcggttacatgtacatgctgaaattgaaccacttagtcgat
gacaagatgcacgctcgttctaccggctcttatagcttggtaactcagcagccattaggt
ggtaaagcacagtttggtggtcagcgcttcggtgaaatggaagtctgggcattagaagca
tacggtgctgcatacaccttgcaggaaatgttgacggttaaatcggacgacgtaaacggt
cgtacgaagatgtacaaaaacatcgtcgacaacaacctgcaaatggaagcgggtatgcca
gagtcgttcaacgtattgttgaaagaaattcgctctctaggcatcaatatcgagctggaa
cagaactaa
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