Idiomarina sp. X4: CWC33_05865
Help
Entry
CWC33_05865 CDS
T05226
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC33_05865 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_05865 (recQ)
03400 DNA repair and recombination proteins [BR:
idi03400
]
CWC33_05865 (recQ)
Enzymes [BR:
idi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWC33_05865 (recQ)
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWC33_05865 (recQ)
DNA repair and recombination proteins [BR:
idi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CWC33_05865 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATZ74553
LinkDB
All DBs
Position
1221096..1222949
Genome browser
AA seq
617 aa
AA seq
DB search
MSSTAVSTAEQLAQDPLQSKLESVFGYHEFREGQRDIMDAALNGRDSLVLMPTGGGKSLC
YQLPAICSDGVAVVISPLLSLMQDQVEALNALDINAATLHSGVSAEQSMNTLQALQRGDI
KLLYVSPERILQPSFIERLQTLNLSFIAVDEAHCISQWGHDFRPEYGQLGVLRSYLPNTP
FMALTATADSATQHDIIERLHLSAPLVHRSSFDRPNIRYVVQEKYKPLKQVKDYVKKQKG
VAGIIYCGSRKKTEELAESLQQSGVRAAPYHAGLEHTLKETTLRQFLRDDIDVVVATVAF
GMGINKPNIRFVVHFDIPRSVESYYQETGRAGRDGLPAEAMMLYDPRDAQWIRRMIDEHD
NEQRRAVEAQKFSAMQAMAEAQTCRRLVVLNYFNEYSDKECGNCDLCLDPPTRYDALEDA
QKALSCVYRVGQQFGINHVVEVLRGSKAQRVLELGHDTLTTYGLGKAKPQEHWFSVLRQL
IHRGLIIQDIRRFAALQLTEAARPVLKGEVPLELAKPRLELTATKTRITDRGDYNKILFR
RLRKLRKDIADKEQVAPFVVFSDAALVEMCVHYPTTAADMLDINGVGEVKLARYGQEFMS
AIEEFLAGTSERQLFNG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaccgcagtcagcactgcagaacaactggcgcaggatccgcttcagtcgaag
cttgaatctgtctttggttaccatgagtttcgtgagggtcaacgggacattatggacgcg
gctctgaacgggcgcgattcgctggtgctcatgccgacgggcggtggtaagtcattatgt
taccagctgccggcaatatgcagcgacggtgtggccgtggttatttcgccgctgttgtcg
ctcatgcaagatcaagtggaagcactgaatgcgcttgatataaacgccgcgaccttgcac
tcaggtgtatcagcagaacagtcaatgaacacgttgcaggcattacagcgcggcgacatt
aaactgctgtacgttagccctgagcgtattttgcagccgagttttattgaacgcttacaa
acgctgaatctgtcgtttatcgctgttgatgaagcgcattgtattagccagtgggggcat
gacttcagaccagagtatggtcagctgggtgtgttgcgcagctatttgccgaacacacct
tttatggccttaacggccaccgcggactcagccacccagcatgacattattgaacggctg
catttgagtgcgccattagtgcaccgcagctcatttgaccgccccaatattcgttacgtg
gttcaggaaaagtataaaccgctaaagcaggttaaagactacgtcaaaaaacaaaaaggc
gtggccggtatcatttattgtggtagccgcaagaaaaccgaagaactggcggaaagtttg
cagcagtcgggcgttcgggcggcgccttatcatgcggggctggagcatacgctcaaggaa
acgaccctgcggcagtttctgcgtgacgatattgatgttgtggtggccacggtggcgttt
ggtatgggtatcaacaagccgaacattcgttttgttgtgcattttgatattccgcgtagc
gtcgagtcgtactatcaggaaaccgggcgagccggacgggacggtctgccagcggaagcg
atgatgctttacgatccgcgagatgcgcagtggatacgccggatgatagacgagcacgat
aatgagcagcgtcgggccgtggaagcgcagaagttctcagccatgcaggccatggccgaa
gctcagacctgtcgccgccttgtcgtattgaactactttaatgagtattccgataaagag
tgcggaaactgtgatttgtgtttggatccgcctactcgttacgacgctctggaagacgcc
caaaaagcgcttagttgtgtttaccgtgtggggcaacagtttggtattaaccatgtggtt
gaagtattgcgaggctccaaagctcagcgagtccttgagcttggtcatgacacattgacc
acctacgggctcggtaaggcaaaaccacaggagcattggttttcggtattgcgccaactg
attcaccgggggctgattattcaggatattcgtcggtttgcggccttacagctgaccgag
gcggcgcgcccggtgttaaaaggtgaagtgccgttagagttagccaaaccaaggctcgag
cttactgcaactaaaacccgaattaccgaccgtggcgactataataaaatactcttccgg
cgtttgcggaaacttcgtaaagacattgcggacaaagaacaagtggcaccttttgtggtg
ttcagtgacgctgcattggtggaaatgtgtgttcattatccgacaaccgccgccgacatg
ttggatatcaatggtgttggtgaagtgaaactggctcgttatggtcaggaatttatgagc
gctattgaagagtttttagccggaacaagtgagcggcagttatttaatggttga
DBGET
integrated database retrieval system
