Idiomarina sp. X4: CWC33_05955
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Entry
CWC33_05955 CDS
T05226
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CWC33_05955 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idi03400
]
CWC33_05955 (recB)
Enzymes [BR:
idi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CWC33_05955 (recB)
DNA repair and recombination proteins [BR:
idi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CWC33_05955 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_11
AAA_25
AAA_12
DUF6702
DUF6305
Motif
Other DBs
NCBI-ProteinID:
ATZ73267
LinkDB
All DBs
Position
1242443..1246132
Genome browser
AA seq
1229 aa
AA seq
DB search
MSQSSTHILENPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGAPQTAFERELVPK
NILVMTFTKAATEELSDRIRARLAEAAAYFRDPDSVDSDPFLASLREDCVAKEQNLKHLA
RLLDLASQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQAAEDYFRRF
IYPADAKLSAKLLEDLESPKKLLGLTYSLSKSGQAPVEGDLQTLLIEAENGHKQRIAAIK
QEVAPILRDLIEKASKVKGTVPKLKQFQKFADWCADSELVEPEVTDANWKNIRTGELKLF
ANGKLGGMSESWAMLGQLQERIKQSKVQQTQELAKVKQHAAFWVNKRFAELQNQRAEMGH
DDMLTRLRDALKGPSGEALAAAIRKQYPIAMVDEFQDTDPVQYEIFNRIYNLAEPYPGTG
IFLIGDPKQAIYSFRNADIFTYLKARRDTAGRHYNLAKNFRSSQAMVDSVNALFERAEEL
PRGAFLFKTEDDNQLPFNRVAANGLKRTFKHCLLSSHLRTAPALLWSVSNEEKRNKAILF
KAAANHHANLIASLLNDPQAGYYNADDVLEQRVKTSDIAVLVNNFNEANAIKKALSDRGL
KSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATRLLGLPFAELEHIHSNEQ
AWEARVEQFLSYHDQWLRQGVLAMLHNVLHDHQVPATLLEDRIHGERQLSDVLHIAELLQ
QQSLVLDGIPALVNHFAEQVNERHGFDSDSRTQVEEQQLRLESDADLIKIITIHKSKGLQ
YPLVFMPFVAYTKSEPYRIKPPTVYHDENGELQVLWSKDDDNKQRLSDEILAEDLRKMYV
AVTRAQYATFIALEAMSEHRNNPLFYLLNGGEALSDELYNVVNEHWQQSAHTQVTRLEED
EPLVRALEQEQKTPKLTPKTMPAGRKLERWWVASYSALKYEGAVTKSTQAPQSPDEMNLL
DEREDKDEQVASVAEPSADSIHHLPKGAGPGSFLHNLLEESANRGFEVIAHDASERTELV
QRFCVSPLWQEHEQSIAQWLNAYLQTEFTLNANGDKISLSQLQQYKAEPEFWFGASGVNA
QTLDNLVQQHTLPGYERPALEPNLLNGMLKGFIDLVFEHNGKYYVADYKSNWLGEDDHAY
SEDAMREKILHSRYDLQYVIYTLALHRLLKARLGDEYDYDTQVGGAVYLFLRGHRAETGG
AFCDRPPKELIEQLDSLFAGESVKDKESV
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagccaatcgtcaacgcatattttggagaacccgctcgactttccgctgaacagcagt
cgcctgattgaagcgagcgccggtaccggtaaaacttacaccattgcagcgctgtatgtg
cgtttggtcattggtcacggcgcgccgcaaacagcctttgagcgcgagcttgtacccaag
aacattctggtcatgacctttaccaaagccgcgacagaagagctgagtgaccgtattcgc
gcgcgcttagccgaagccgcggcttattttcgtgacccagattctgtcgacagtgaccct
ttcttagccagtttgcgagaagactgcgtagcgaaagaacagaacttaaaacacttagca
cgattattggatttagcgtcacagtcgatggacgaagccgctgtaaaaaccattcacggc
tggtgtcagtccatgctgaaagagcatgcctttgccagcggcagtttattcagtcaggac
gtcgaaaccgacaatgaagagctgcgcttgcaggcagccgaggactacttccgtcggttt
atttacccagcggatgcgaagctgagcgctaagttattagaggatcttgaatcgcctaaa
aagcttttaggtttgacatacagtttaagcaaaagcggtcaggcaccggttgagggagac
ctgcaaactctattaattgaggcggaaaatggtcataagcaacgaattgcggcgataaag
caagaggttgcgcctattttgcgagatttaatagaaaaggcatcgaaagtcaaaggcact
gtgcccaaacttaagcaatttcagaaattcgcggattggtgcgctgattccgaattagtg
gaaccagaagttaccgacgccaactggaaaaatatacgcaccggcgaattaaagttgttt
gcgaatggtaagctaggtggaatgtcggaaagctgggctatgctagggcagctgcaagaa
cgcattaagcaaagcaaagtccagcaaacgcaagaactggctaaagtaaaacaacatgcc
gcgttttgggtgaacaaacgttttgctgaattgcaaaatcagcgtgcagagatggggcat
gacgacatgctcacgcgcttacgcgatgcgttaaaaggccctagcggcgaggcgctggcg
gccgctattcgcaagcagtaccccatcgccatggttgatgagtttcaggacaccgatccc
gttcagtatgagatattcaaccgtatctacaacctggcagaaccgtatcccggcactggt
attttcctgattggtgacccgaagcaggcgatatacagtttccgtaatgcggatattttc
acctatttaaaagctcggcgagacaccgcagggcggcactataacttagcgaaaaacttc
cgctcgtcacaggcgatggtggatagcgtaaatgcgctgtttgagcgcgcagaggagcta
ccccgcggcgcctttttgttcaaaaccgaagacgacaaccaactgccctttaaccgtgtg
gctgccaacggacttaagcgtacgttcaagcactgcttgttatcgagtcatttaagaacc
gcaccggcgttactttggtcggtatcaaacgaagaaaaacgcaataaagccatcttattt
aaagcggcagcgaaccatcatgccaacctaatagcgtcgctgctgaatgacccgcaagcc
ggttattacaatgcagacgatgtgctagagcagcgtgttaaaaccagcgacattgcggta
ctggtgaataacttcaacgaagcgaatgccattaaaaaggcactgagtgaccgcggtctt
aaaagcgtttatttgtcggatcgcgagtcggtatttgcacaacgcgtggctaaagactta
ctggcactggtcagcgcctgtgccgagccgcgtgatccttcacttattcgcagcgctctg
gcaacgcgtttgttgggtttgccgtttgctgaacttgagcatattcacagtaatgaacaa
gcttgggaagcgcgtgttgagcaatttttaagttatcacgaccagtggctgcgccagggc
gtgttagctatgttgcacaatgtgttgcacgaccatcaggtccccgcgacgttgctggaa
gaccgtattcatggtgaacgacagctgtcagacgtgttgcatatagctgaattactgcaa
cagcagagcctggtgttggatggcattccggcgttggtgaatcattttgccgagcaggtg
aatgaacgccacggctttgacagtgatagtcgcacgcaagtagaagagcaacagctgcgc
ctggaaagtgacgctgatctgataaaaattatcaccattcataagtccaaagggttgcag
tacccgctcgtatttatgccctttgtggcttataccaagtcggagccctaccgtataaag
ccacctacggtatatcacgatgaaaatggcgagctgcaagtactctggtccaaagacgac
gacaataaacagcgattaagcgacgaaattctcgcagaagatttacgtaaaatgtacgtc
gccgtgacccgtgcacagtacgccaccttcattgcgctggaggccatgagcgagcatcgt
aataatccgttgttttacttattaaacggcggtgaggcgttgtctgacgagctttacaac
gttgttaatgagcactggcagcaaagcgcgcatacgcaggtgacacgcctggaagaggac
gaacctctcgtgagagcgcttgagcaggagcaaaaaacacctaagttgacgcctaaaacg
atgccggctggccgaaaactcgaacgttggtgggtggctagctacagcgcgctgaagtat
gaaggcgcggtgacgaaaagcacacaggcaccgcagtcgcccgatgaaatgaacctgctg
gatgagcgagaagacaaggacgagcaagtcgccagtgtcgcagagccgagtgcggacagc
attcaccacttacctaaaggcgccggaccgggctcctttttgcataacttattggaagag
tcggcgaatcggggttttgaggtaatcgctcacgatgcctccgagcgcactgagctggta
cagcgtttttgtgtcagccctttgtggcaggagcatgagcagagcattgcacaatggctg
aatgcgtacctacaaaccgaatttacgctgaacgctaacggcgacaaaattagcctcagc
cagttgcagcagtacaaagccgaacccgagttttggtttggtgccagtggcgttaacgca
caaacactggataacctggtgcaacaacacacattacccggttacgagcgccctgcactg
gagcctaacttgctgaatggcatgttaaaaggctttatcgacttggtctttgaacataac
ggaaagtattacgtggcagactacaagtccaattggctgggtgaagacgaccatgcctac
agcgaggatgctatgcgcgaaaaaatacttcacagccgttatgacctgcaatacgtgatt
tatacgctggcattgcaccgtctgctaaaagctcggctgggcgatgaatacgattacgac
acccaggttggcggcgcagtttatctctttttacgcgggcacagagccgaaactggcggc
gcattttgtgacaggccaccgaaagagctgatagagcagctggacagcctattcgccgga
gaaagcgtcaaagacaaggagtcagtatga
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