Idiomarina sp. X4: CWC33_06895
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Entry
CWC33_06895 CDS
T05226
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
idi
Idiomarina sp. X4
Pathway
idi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC33_06895 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idi03021
]
CWC33_06895 (rho)
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_06895 (rho)
Transcription machinery [BR:
idi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CWC33_06895 (rho)
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWC33_06895 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ATZ73446
LinkDB
All DBs
Position
1435935..1437203
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AA seq
422 aa
AA seq
DB search
MNLTELKDKPVNELVELADSMGLENMARLRKQDIIFAILKAHAKSGEDIYGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHADERFRLERGNGSTEDITARVLDLSAPIGKGQRGLIVAPP
KAGKTLLLQNVATSIAANHPEAELIVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKLAEKRVFPAIDF
NRSGTRREELLTSQDELQKMWILRKIMNPMGEVEAMEFLIDRLQMTKTNDEFFESMKRQR
NS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgaacttaaagataaacccgtaaacgagctcgttgagctcgcggactca
atgggccttgaaaatatggcccgtctgcgtaagcaagacatcatttttgctattttaaaa
gcccacgcgaaaagcggtgaagacatatacggcggcggtgtgttggaaatattgcaggac
ggcttcggcttcttgcgatcggccgattcgtcatatttggccggtcccgatgacatttat
gtatcgcctagccaaattcgtcgctttaacttgcgcacaggtgatacgattggcggtaaa
attcgaccgccgaaagacagcgaacgttattttgccctcctgaaaattcgcgaagtcaac
ttcgacaaacctgaaaactcccgtaataaaattctctttgaaaacctgacaccattgcat
gcagatgaacgttttcgtttagagcgtggtaacggcagtacggaagatattacggcgcgt
gttcttgatttgtcggccccgattggtaaaggtcagcgtggtcttattgtggcgccaccg
aaagcgggtaagacgctattactgcaaaacgttgcaacatctattgcggcgaaccatccg
gaagcagagcttattgtgctgcttatcgatgaacgtccggaagaagtaacggaaatgcac
cgtttggtgcagggtgaagtggttgcttcaaccttcgatgagccagccagccgccacgta
caggtcgctgaaatggttatcgaaaaagcgaagcgtttggttgagcacaaaaaagatgtt
gtcatcttattggactcgattactcgtttggcgcgcgcttataacaccgttattccaagc
tcaggtaaagtcctgacgggtggtgtggacgctaacgcgctacacaagccaaaacgtttc
tttggtgctgcccgtaacgttgaagaaggtggcagcttaaccattattgcaactgcgctt
atcgataccggctcgaagatggatgaagttatctacgaagagtttaaaggtaccggtaac
atggaactgcatttgaaccgcaagttggcagagaagcgtgttttccctgcaatcgacttt
aaccgttcaggtacacgtcgtgaagaattgctgacgtctcaggacgagcttcagaaaatg
tggatcctgcggaaaattatgaacccaatgggcgaagttgaagccatggagtttttgatt
gaccgtttgcaaatgactaagaccaacgacgaattcttcgaatcgatgaagcgtcaacgc
aacagctaa
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