Idiomarina sp. X4: CWC33_07725
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Entry
CWC33_07725 CDS
T05226
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
idi
Idiomarina sp. X4
Pathway
idi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWC33_07725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idi03021
]
CWC33_07725
Transcription machinery [BR:
idi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWC33_07725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
ATZ73592
LinkDB
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Position
1617385..1619217
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AA seq
610 aa
AA seq
DB search
MQQSRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEIVDSDQVEDIIRMINDMGIRVFESAP
DADDLMMAESAADEDAAEEAAQALASVDSEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEEGINQVQCSVAEYPEAINFLLDQWDSYEAEELRLTDIISGFIDPEEVDEAPVAATH
VGSELPDEELEDEDDDGDDDEEEESDTGIDPEFARAKFTELREQYEATRQAIAKHGRDGA
DARVEIDKLSDLFKQFRLVPKQFDRLVKDMRSMMQRVRVQERIIMKLSVEQGGMPKRDFM
KAFAGNENSMAWVDAQIGSGESYAGTMKETRDEIERCVNKLVDVEKETGLTIGKVKEINR
RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPQPEEL
AERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRNS
VREVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SEQLKSFLDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagagtcggcaatcgcaactgaaagtacttattgcgaaaggcaaagagcaaggt
tttttaacttttgcagaggttaacgatcacttacctcaagaaattgtagattccgatcag
gttgaagatattattcgcatgatcaatgacatgggtatccgtgtgtttgaaagtgcgccc
gatgccgatgacttgatgatggccgaaagtgctgccgatgaagatgctgcggaagaagct
gcgcaagccctggcgtctgtagacagtgaaataggccgaacgactgacccagtgcgtatg
tacatgcgcgaaatgggaaccgtagagctgctgactcgtgagggcgaaattgatatcgct
aaacgcattgaagaaggtattaaccaagttcaatgttccgtggcggaataccccgaagcc
attaatttcctgttagatcagtgggactcttacgaggctgaagagctgcgtttaactgac
attatttcaggttttatcgatccggaagaggtcgatgaagcgcctgttgctgctactcac
gttggttctgagctaccagacgaagagctggaagacgaagatgacgacggagatgatgac
gaagaagaagagtcagatactggtattgacccggaatttgcgcgtgccaaatttactgag
ctgcgtgaacaatacgaagcgactcgccaggcaatcgccaaacacggtcgtgacggtgcg
gacgctcgtgttgaaattgataagctgagcgatctgttcaagcagttccgcctagtgcct
aagcagttcgatcgtttagtaaaagatatgcgctcaatgatgcagcgcgtgcgtgtgcaa
gaacgtattattatgaagttaagcgttgaacaaggcggcatgcctaaacgtgacttcatg
aaagcctttgccggcaatgaaaacagcatggcgtgggttgatgcgcaaatcggttcgggc
gaaagctatgccggaacaatgaaagaaacacgcgacgaaattgagcgttgtgtgaataag
ctggtcgatgttgaaaaagagaccggcttaaccatcggtaaagttaaagaaattaaccgc
cgtatgtctattggtgaggcgaaagcccgccgtgcgaaaaaagagatggtggaagccaac
ctgcgtttggttatttcaattgcgaagaaatacaccaaccgtggcctgcaattcctagac
ttaattcaggaaggtaacatcggcttgatgaaagcggtggataagttcgaatatcgccgt
ggttacaagttctctacctatgctacgtggtggatccgccaggcaattactcgttcaatt
gcggaccaggctcgtacgattcgtatcccggttcacatgattgaaaccatcaataaattg
aaccgtatttcgcgtcaaatgttgcaggaaatgggccgagagccgcagccggaagaactg
gctgagcgcatgatgatgccggaagacaaaattcgcaaagttctcaaaattgcaaaagaa
ccgatttcaatggaaacccctattggtgacgacgaagattcgcacttgggtgatttcatt
gaagacaacacgctggacttacctatcgattcggcgacgtctgagagcttgcgtaactca
gtgcgcgaagtgctcggcggccttaccgctcgagaagcgaaagtcttgcgtatgcgtttt
ggtattgatatgaatactgaccatactttggaagaagttggtaaacagtttgatgtaact
cgtgaacgaattcgtcaaattgaagccaaagcattaagaaagcttcgtcatccaagccgc
tctgagcagcttaaatcgttcttggatgagtaa
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