Idiomarina sp. X4: CWC33_09480
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Entry
CWC33_09480 CDS
T05226
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
idi
Idiomarina sp. X4
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
idi03016
]
CWC33_09480 (rnd)
Enzymes [BR:
idi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CWC33_09480 (rnd)
Transfer RNA biogenesis [BR:
idi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CWC33_09480 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
ATZ73913
LinkDB
All DBs
Position
1969811..1970980
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AA seq
389 aa
AA seq
DB search
MTQLELPESVRQYRLISSTDELADFCSKARQAGWFAIDSEFVRERTFYANLGLLQMHAGG
DTVIVDPLADINLEPVWSLISSDSIETVLHAGGEDIELFFYESGGAQPSRVFDSQIAAGF
CGIGESMGYARLVSDLFDNVELDKSLSRTNWLKRPLSPEQLDYAAADASYLAVMYPYLKA
LCEEKGCLDIVYEESVLQVRKRTTRIPDDLLYLQVGNAWQLNGEQLAVLQKLASWRFNKA
RKKNIPLGFIAKDGALLELARRKPKSQSDLNHIRDLPPLSKKYSGNEMITVIRKAEEQAT
SKSLKPLSRLDDMPGYKETFKAIKQKVTELAESLDVPVSLVASRKQINDLINFFWQYSPQ
QQERLPQPDLLTGWRNAAIGAELRAIVTS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcagcttgaacttccggagtcggtgcgtcagtaccggctcatctcttctaccgat
gaattagccgatttctgctctaaagctcgtcaggcgggttggtttgcaatcgactctgag
tttgtgcgagaacggactttttacgcgaatcttggactgttacagatgcatgctggcggt
gacacggttatcgtggatccgttggctgatattaatttagagccagtatggtcgcttatt
tcttcggatagcattgaaaccgttctgcacgccggtggggaagacattgagctgtttttc
tatgaaagtggcggtgctcaaccaagccgtgtgtttgatagccaaatagctgccgggttt
tgtggtattggtgagtccatgggctatgctcgcttagtcagcgatctatttgataatgtg
gagctcgacaaaagcctctcccgcacaaactggttaaaacggcctttaagccctgaacaa
ctggattacgctgccgctgatgccagctatctggctgttatgtatccttatttgaaagca
ctttgcgaagaaaagggctgtttggatatcgtctacgaagaatcggtacttcaagttcgt
aagcgaacgactcgcattcctgacgatctcttatatttgcaagtgggtaatgcctggcaa
ctcaatggtgagcagttagcggttttacaaaagttggccagttggcggttcaacaaggct
agaaagaaaaacattccattaggctttatcgctaaagacggcgcattgttagaactggcc
agacgcaaacccaaatcacaaagcgatctaaatcacattcgtgacttaccgccgttatca
aaaaagtattccggcaatgaaatgattacagtcattagaaaagccgaagagcaggcgact
tctaaatcgctgaagcccttaagccggttggacgatatgccgggctacaaggagacgttt
aaagcgataaagcaaaaagtcaccgagctcgctgagtcacttgatgtgcctgtatcatta
gtggcatcacgaaaacaaataaatgacctgattaattttttctggcagtactcgccgcag
caacaggaacgtctgccgcaaccagacttactgacgggttggcgaaatgcagcaattggg
gcagaattaagagctattgtaacgtcatag
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