Idiomarina sp. X4: CWC33_10535
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Entry
CWC33_10535 CDS
T05226
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC33_10535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_10535
Enzymes [BR:
idi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWC33_10535
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWC33_10535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Gag_p24
P-loop_SecA
AAA_22
UvrD-helicase
HI1480
Motif
Other DBs
NCBI-ProteinID:
ATZ74098
LinkDB
All DBs
Position
complement(2174972..2176222)
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AA seq
416 aa
AA seq
DB search
MSTEQNQNSFQSLGLNDNILRAVNECGYTTPTPIQEQAIPTVMKGHDLLAAAQTGTGKTA
GFTLPLLHNLSSTKTEGKPVIRALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGI
NPQINALRRGVDILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMK
LIPEERQTLLFSATFSKEIKALAQQFMHQPKLVEVARQNATADTIEQRVYPVDKKRKREL
LSYLIGSRNWRQVLVFTRTKHGANRLATQLSDDGLPAMAIHGNKSQGARTKALAQFKAGK
LRVLVATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHK
LLRDIEKLTKNEIPKEVVPGFEPDPSIKPEPIQKPRGNRPNNSRRAPKHKRPATRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaacaaaatcagaactcgtttcagtcactaggactgaacgacaatatctta
cgagccgtaaatgaatgcggttacaccacccctaccccgattcaagagcaagccattccg
accgtaatgaaaggtcatgacttactggcagcagcgcaaaccggaaccgggaaaacagca
ggatttacgcttcctttattgcataacttgtcttcgacgaagacagaaggtaagcctgtt
attcgagcgttaatattaacaccgacacgtgagttagcagctcaggttgaggataacctc
aacacctacgcaaaatacacaggccttaaatcattggtcatttttggtggcgttggtatc
aacccacaaattaatgcgttacgtcgaggtgtcgacattttagtagcaacccccggacgc
ttgcttgaccatagccgtcagggcacggttgatttaagcaaaatcgatgtgcttattctt
gatgaagcagatcgcatgctagacatgggttttattcatgacattaaaaaagttatgaaa
ttaattcctgaagagcgccagacgctgctgttctctgcgacattctcaaaagaaataaaa
gcattagctcaacaatttatgcaccaacctaaactggtggaagttgctcgccaaaatgcc
actgctgatacaatcgagcagcgcgtttatccggttgataagaaacgcaaacgtgagtta
ctaagctacctaattggcagcagaaactggcgacaagtattagtctttacccgaaccaag
cacggggctaatcgtttggcgactcaacttagcgacgacggtttaccagcaatggctatt
cacggcaataagagtcagggcgccagaaccaaagctttagcgcagtttaaagcagggaag
ttacgtgttttagtcgcaaccgatattgctgcacgcggtattgatatcgacgaattacca
catgtaataaattttgaactaccacaagttgctgaagactatgtgcatcgcattggacgc
accggccgtgccggcagcgaaggcgaagccgcttctttagtttgcgttgacgaacataag
ttgctacgcgacattgaaaaactgaccaaaaatgagataccgaaagaagtggttcccggc
tttgaaccggatccaagcataaaaccggagcctatacaaaaaccaagaggcaaccgccca
aataattcacgccgcgcaccgaagcataagcgtccggcgacacggcgctaa
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