Idiomarina sp. X4: CWC33_11500
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Entry
CWC33_11500 CDS
T05226
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
idi
Idiomarina sp. X4
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_11500 (hrpA)
Enzymes [BR:
idi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CWC33_11500 (hrpA)
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CWC33_11500 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
ResIII
nSTAND3
AAA_19
T2SSE
AAA_11
ABC_tran
SLFN-g3_helicase
NNH7
AAA_30
Cas3-like_C_2
ATPase
Zeta_toxin
FtsK_SpoIIIE
MS_TIM-barrel
NACHT
Motif
Other DBs
NCBI-ProteinID:
ATZ74285
LinkDB
All DBs
Position
2374423..2378346
Genome browser
AA seq
1307 aa
AA seq
DB search
MSRNKTNTNPFVKKYQSQLEQCTYQKAAQLRGRLRGLVKIKDEKKQQKVLRAIEADIEQA
ELNYLQRCEQSFHIEYPENLPVAQQRDDIKKAIEDNQVVVVAGETGSGKTTQLPKMLLEL
GYGRKGVIGHTQPRRLAARSVAARIGEELQDYSKQQVGYKIRFQDETAPTTAVKLMTDGM
LLSELQQDPLLLQYDAIIIDEAHERSLNIDFLLGVLHTLLPKRPDLKVVITSATIETERF
SKHFHDAPVLTVSGRTYPVEVRYRDPSEGNKTSETDILQGVCDAVEELQSEGDGDILIFA
SGEREIRDYADAIGDLKLRNTETLPLYARLSSHEQNRVFQSHSQRRIVIATNVAETSLTV
PGIRYVIDPGTVRISRYSYRTKVQRLPIEPISQASANQRKGRCGRIGPGICIRLYSEDDF
LQRPEYTDPEILRTNLAAVILQMSALRLGDIRDFPFVQKPDERFVKDGLNLLEELNAIEP
GKKREKPRLTEIGRQLSRLPLDPRLARMVLAAKQYGCVREMLVITAALSIQDPRERPHEF
KQKADEWHQRFHDKQSDFMAYLNLWNYIKDKQKELSGNQFRKQVAREFIHFMRLREWQDI
YTQSRQTVRELGFSINEEPATYEQVHRALISGLLSQVGMKEDRHEYQGTRQTKFHIFPGS
GLFGKPPKWVVTAELVETSKLYARINADIDPLWVEEAASHLVKKSYLEPHFEKKKGSVVA
DEQVTMLGLVLVPRRRVQYGPVAPTKAREIFIREGLVNSQLQRKLPFIQHNLKLIQDVQA
LEAKSRRRDILVDEEVLFEAYERHIPEGIYNEKLLAGWWHKAAKKEPKLLFFERDDLIAG
ETEHITENDYPEFWRQGNLRLPLTYHFEPNAVDDGVSVNIQLGVLNQVKPEGFDWHIPAL
REERIAHLIKSLPKALRRNFVPAPNFAGAIMADVEPFEMSLLEAMTHKLRRMTGVTVPGD
SWDENSLPLHLRMNFKVLDGKKLIKQGRDLQRLQDELSGKVQQRLEKAAGDDISRDDVES
WDFDDLPEVVTEAQQGFEIKAYPGLAIKGSREVALQLFDSKEEAEQQHRQGLRRLLLKQI
PSPVKHLQKSLSNKAKLAMYFNPWGKVETLIEDCIAAAVDAVIDEQLEAGNRLRDEQGFE
RLKEQVRGELNERVEQIALRVEQCLTHSQDVRKALKGKIPLDQIQSRGDIQDQLDNLIFP
GFVSRFGEQRLDDIVRYLKAMQRRLEKLPVDPNKDRLMTIALSNLQEAYSAVLKRYKTGA
LIPEDVAEIRWMIEELRVSFFAQTLGTKYPVSEKRVKQAIEAIKKGG
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaacaaaacgaataccaaccctttcgttaaaaaatatcagtctcaattagag
caatgtacgtaccaaaaggccgcgcaactgcgcggtcgtttgcgtgggctggtgaaaata
aaagatgaaaagaagcagcaaaaagtgctcagagccatcgaggccgacattgagcaggcg
gagctgaattacttacagcgctgtgagcagtcttttcatattgaataccctgaaaattta
ccggttgcacagcagcgagacgatataaaaaaagccatagaggacaaccaggtggtggtt
gtcgctggtgaaaccgggtctggtaaaacgactcagctaccgaaaatgctgctggagctt
ggttatggtcgcaaaggtgtcatcggccatacacagccaaggcggttagcggcccgaagt
gttgccgcgcgcattggtgaagagcttcaggattactctaaacagcaagtaggttacaaa
atccgctttcaagatgaaaccgccccgacgactgctgttaagttaatgactgacggtatg
ctgctctccgagctgcaacaggacccgttactactgcaatacgacgctattattatcgat
gaagcgcacgaacgctcgttaaacatcgactttttgctcggcgttttacacaccttgctg
cctaaacgcccggacttaaaagttgttattacctcggcaactattgaaaccgaacgtttt
tctaagcactttcatgatgcaccggtattaacggttagcggtcggacttatcccgtggaa
gtgcgttaccgtgacccatcagaaggcaataagacctctgaaacggatattctgcaaggc
gtttgtgatgcagtagaagaactgcagagtgaaggggacggtgacattcttatttttgcg
agcggtgagcgggaaattcgcgactacgccgacgctattggcgatttaaaactgagaaac
acggaaactctgccactttatgcgcggctatcttcccatgagcaaaatcgcgtgtttcag
tcgcattctcaacgacgtattgtcattgctaccaatgtggcggaaacgtcactgacagtg
cctggcatccgctatgtgattgatccgggaacggtacggattagtcgttacagttaccga
acaaaggttcagcgcttgccgattgagccaatttcgcaggccagtgcgaatcaacggaag
gggcgttgcggtcgtatcggtccgggcatttgtattcgcttgtacagcgaagacgacttt
ttacagcgtccggaatataccgacccggaaatactacggacaaatttagcggccgttatt
ctacaaatgtcggcgctgcgtcttggggatattcgagactttccgtttgtacaaaagccg
gatgagcgctttgttaaagacggtttgaatctgctggaagagctcaatgccatagagccg
ggtaaaaagcgagaaaagccaaggctcacggaaataggacggcagctttctcgtttaccg
ttagaccctcggttggcgcgaatggtgttggccgccaaacagtatggctgtgttcgggaa
atgctggtgataacagccgctttgagcatacaggatccgcgtgagcggccgcatgagttt
aaacaaaaagccgatgagtggcatcagcggttccatgacaagcagtccgacttcatggcg
tatctgaacctatggaattacataaaagacaagcaaaaagagctgtcaggtaatcagttt
cgcaagcaagtggcacgtgaatttattcatttcatgcggctacgcgagtggcaggacatt
tatacacaaagtcgccagacggtgcgggagcttggtttttctattaatgaagagcctgcg
acttatgaacaagtgcaccgtgcgcttatatccggtttgttgtcgcaagtaggtatgaaa
gaagaccggcatgaatatcagggcacgcgacaaactaagtttcacatttttccgggctcc
gggctctttggcaaaccacctaaatgggtggtgaccgcagagcttgtcgaaacctcgaag
ctgtatgcgcgcattaatgcggatatagaccctttatgggttgaggaggcagcttctcac
ttggtgaagaaaagctatttagagccgcactttgagaagaaaaaaggcagtgtggtggca
gacgagcaggtgactatgctgggcttagtgttagtgccaagacgacgcgttcagtatggc
cctgtagcaccaactaaggcgcgtgagatattcatccgcgaaggcttggttaacagtcaa
ttgcaacgcaagttgccgtttattcaacacaacttgaaactgattcaagacgttcaggcc
ctggaggcgaagtcgcggcgccgcgatattctggtggatgaggaagtcctttttgaagcg
tatgaacggcacataccggaaggcatttataacgaaaagctgttagccggttggtggcat
aaagctgccaaaaaagagccgaagctattgttttttgaacgagatgatctcattgccggt
gagaccgaacacattaccgagaacgattatccggagttctggcgacagggtaacttgcgt
ttgccattaacctatcactttgagcctaatgcggttgatgatggggtgagcgtcaatatt
caattaggggtgcttaatcaggtaaaacctgaaggttttgactggcatataccggcattg
cgcgaagagcgcattgctcatttaattaagtcactaccaaaagcgttgcgcagaaacttt
gtgcctgcgcctaattttgctggcgccataatggctgacgttgagccctttgaaatgtcg
ttgttagaagccatgacacacaaacttcgccgtatgaccggcgtaaccgtaccgggtgac
agctgggacgaaaacagtttgccattgcatttacgtatgaactttaaagtactggacggc
aaaaagctcataaagcagggcagagatttacaacgtttacaagacgagctgtccgggaag
gttcagcaacgtctggaaaaggctgctggtgatgatattagccgcgatgacgttgaaagc
tgggactttgacgatttgccggaggtggtgacagaagcgcagcaggggtttgaaattaag
gcttatcctggcttagcgattaaaggcagccgtgaggttgcgttgcagttatttgactcg
aaagaagaagccgaacagcagcaccgacagggcttgcgtcgactgttgttaaagcaaatt
ccatcaccagtaaagcatttgcaaaagtcgctatcgaataaagcgaagctggcgatgtac
tttaacccctggggtaaggtagaaactctaattgaagactgtattgccgcagcggttgat
gcggtgattgacgagcaacttgaagcaggaaataggctaagagacgaacaaggttttgaa
cgcttaaaagagcaagtgcgaggcgaattgaacgaacgagttgaacagatagcgctcagg
gttgagcaatgtctgacacattcgcaggatgttcgcaaagcgcttaaaggtaaaattccg
ctcgatcaaattcagtcgcgaggtgacattcaggatcaactggataacttaatttttccg
ggctttgtctcgaggtttggtgaacaacggctcgacgatattgtgcgctacttaaaagcc
atgcaacgtcgtttggaaaaactgccggtggatcccaataaagatcgcttaatgaccata
gcgctcagtaatttacaggaagcctatagtgcggtcttaaaacgttataaaaccggcgct
ttgattcctgaagatgtagctgaaattcgctggatgatagaggagctgagagtttcgttc
tttgctcagacgttaggaacgaaatatccagtgtctgagaagcgagtgaagcaggccata
gaggcgatcaaaaaaggcggctga
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