Idiomarina sp. X4: CWC33_11590
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Entry
CWC33_11590 CDS
T05226
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC33_11590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idi03019
]
CWC33_11590
03009 Ribosome biogenesis [BR:
idi03009
]
CWC33_11590
Enzymes [BR:
idi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CWC33_11590
Messenger RNA biogenesis [BR:
idi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWC33_11590
Ribosome biogenesis [BR:
idi03009
]
Prokaryotic type
rRNA processing factors
CWC33_11590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATZ74303
LinkDB
All DBs
Position
complement(2396091..2399006)
Genome browser
AA seq
971 aa
AA seq
DB search
MKRMLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPEGYTFQGRPNIKDVVSEGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERSALKEALSEINVPKEMGLIVRTAGVGKSKEEL
EWDLNVLIHHWEAISKAATERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSPKVYEQV
RNHIQIIRPDFLQRVKQYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDVGGLVVIDFIDMTPARHQRDVEN
RLRDSLAQDRARIQVARISRFGLMEMSRQRLRPSLGESANNVCPRCNGQGTIRSSDSLAL
SILRLIEEEALKDNTIQVHAQVPVDVATYLLNEKRQSLNHIEKRHDVKIVIIPNHHLETP
HFEVMRIRDDEVPEAASFELVQKPEQHESPVSITLTQESAKFDEPALKGLQAPNAAPSPA
PAPKQPEKPSLLKRLSTWLSKLFESEEENDKNKQSSNQRRPNQRRNNNNRRGRGRRPANR
QQQGRNNAADKAAEDSAKSDKNTDDAKGTNNKPNRNRNDRRRRGGRNRNQQNTQNASAQN
QQQTSEQNAQPQAVAEKAHEVKPRRQRKPMDKSVRVKGDERGLEQQVQSPSAKQEEPAVK
NDETRQAPEQKADSTSIKKNAESEKGSSEATQQRALDPRMKAAAELVENNEHLPVNEQKP
AEEATPEPGKESDEQAGENSTPEEVATKAESTPEPDVQEMTDQTPETGSEQTDASESKDA
TESETTDSEKEAPLKGDSTESAENTPKGDAEEKKARSRARRSPRHQRAAGQQRKQNRENK
EQDDAPIIPARKLSGSAFSPMTKASAVERQAPFQALNVASKETRLAFVKDEQTAGYANAR
SRSFSEMTKCD
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaatgccacgcaattagaagagttgcgtgtggcactggtagat
ggccagcgcctttacgacctggacattgaaagcccgggacatgaacagaaaaaagcaaat
atctacaaaggtaaaataacccgcatagagcctagcctagaagctgcttttgtcgactat
ggcgcagagcgtcacggcttccttccattaaaagaaattgccaaaacctattttcctgaa
ggctataccttccaggggcgtccaaacattaaagacgttgtttctgaaggtcaggaagtt
atcgttcaaattgataaagaagagcgtggccaaaaaggtgcagcactaactaccttcatt
tctttggcgggcagctatctggtattaatgcctaacaaccctcgtgcaggcggtatttct
cgccgtatagaaggtgacgagcgttcagctttaaaagaagctttatcggaaattaatgtc
ccgaaagaaatgggtcttatcgtccgtaccgcaggcgttggcaaatcaaaagaagaatta
gaatgggacttaaatgttcttattcatcactgggaagcgattagcaaagcggctaccgag
cgccctgctccattcttgattcatcaggaaagtaatgtcattttccgcgcccttcgtgac
tatttacgccgtgacattggcgaagtgcttatcgatagcccgaaagtctacgaacaggtg
cgtaatcatattcaaattattcgccctgacttcttgcagcgcgttaagcaatatgaaggc
gatgtccctttattcagccattaccaaatagagagccaaattgagtcagcgttccaacgt
gaagttcgcctaccttcaggtgggtcaatcgttatcgatcctacggaagctctaacctca
attgacatcaactcatctcgtgcgaccaagggcggtgacattgaagaaaccgctttgcag
acaaacctggaagcggcagaagaaattgctcgtcaactgagacttcgtgatgtaggtggc
ctggtcgttattgactttattgacatgacaccagccagacaccaacgtgatgtcgaaaat
cgtttacgtgacagccttgcgcaagatcgtgcacgcattcaggtggctcgtatttctcgc
tttggcttaatggagatgtcgcgccaacgattacgcccgtcgctgggtgagtctgccaat
aacgtttgtccacgctgtaacggccaggggaccattcgttctagcgactctttagcactg
tctattttgcgtcttattgaagaagaggcgctgaaagacaacacgatacaagttcatgcg
caggtgcccgttgacgttgctacctatttgttgaatgagaaacgtcagtcgctgaaccat
attgaaaaacgccatgacgttaaaatcgttattattccaaatcatcatttagaaacgcca
cactttgaagtaatgcgtattcgcgatgatgaagtgccggaagcggccagttttgaattg
gttcagaagcctgagcaacacgaatcaccggtttctattacgttaacccaagagtcggct
aaatttgatgagccagctcttaaaggtctgcaggcgccaaatgccgcaccttctccagca
ccggcgccgaaacaacctgaaaagccttctttattgaagcgcttatcaacttggttaagc
aagctttttgaaagcgaagaagagaacgacaagaataagcagagttcaaatcaacgtcgc
cctaaccaacgtcgcaacaacaataaccgacgtggccgaggccgtcgccctgctaaccgc
caacagcaaggtcgtaataatgcagccgacaaggcagctgaagactctgctaaatccgat
aaaaatacggatgacgcaaaagggaccaataataagccgaaccgcaacagaaatgatcgc
cgccgtcgcggtggccgcaatcgtaatcaacagaatactcaaaatgctagtgctcaaaat
cagcaacaaacgtctgagcaaaacgctcagccgcaagctgttgcggagaaagcacacgaa
gtgaaacctcgtcgtcaacgtaaaccgatggataagtccgttcgcgtaaaaggagatgag
agaggtttagagcaacaagtacaatcgccttcggcaaagcaagaagaaccggcggttaaa
aacgatgagactcgccaagcgcctgaacaaaaagccgattcaactagtattaagaaaaat
gctgagtctgaaaaaggcagtagcgaagcgactcaacaacgagcactagatcctcgtatg
aaggcagcggcggaacttgttgaaaacaacgagcacttgccagtaaatgagcagaagccc
gctgaagaagcgacacctgaacccggtaaagagtccgacgaacaagcaggggaaaactct
actccggaagaagtcgcgactaaagccgaatcgactccagagcctgatgttcaggaaatg
actgatcaaacgcctgaaactggcagcgaacagacagatgcttctgagtcaaaagatgcg
actgagtcagaaacaactgactctgagaaagaagcgccattgaaaggtgactcaacagag
tctgctgagaatacgcctaaaggtgatgccgaagagaaaaaagcacgcagccgagcgcgt
cgctccccaagacatcaaagggcagctggtcaacaacgcaagcaaaaccgtgaaaataaa
gagcaagacgatgcgcctattattccggcacgtaagttgagcggctctgcattttctcca
atgactaaagcctcagccgttgaaagacaggcaccttttcaggcactaaacgttgcctca
aaggaaacacgcttagcgttcgtgaaagatgaacaaactgcaggctatgcaaatgcccgc
tcacgttcattttctgaaatgacaaagtgtgactaa
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