Isoptericola dokdonensis: I598_0531
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Entry
I598_0531 CDS
T04384
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ido
Isoptericola dokdonensis
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ido03019
]
I598_0531 (hrpB_1)
Enzymes [BR:
ido01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I598_0531 (hrpB_1)
Messenger RNA biogenesis [BR:
ido03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I598_0531 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANC30111
UniProt:
A0A168EJR5
LinkDB
All DBs
Position
555840..558383
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AA seq
847 aa
AA seq
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MEGDESVLLPGPSAPGADLPVRAALPATVDAVRSGGAAVLVAPPGSGKTSLLPLALADAL
GGTIVVAEPRRLATRAAATRLATLVGEPLGQRIGYAMRGERSGGRGLRVEVVTTGLLVRR
LQRDPELPGVSAIVIDECHERHLDADLLLALAVDVRANLRDDLAIVATSATADTARLSRA
LGTDVPAPVITATAALFDVAVEWAPPPVPAPLLPGGRVDPRMLDHVAAVVRRALAETDGD
VLVFVPGEAEIHGVARRLAGHDVLPLFGRQSRAEQDRALTPTATRRIVVTTSVAESSLTV
PGVRVVVDAGLSREPRTDQSRGLGALVTCRVSRSSADQRAGRAGREGPGRVYRCWSATDH
ARLDEHPAPEIAIGDLAAFALELAAWGAPAGDGLTLLDAPPVTAMTAAVELLRRVGAVDD
DGRITRRGRQMAAIGVHPRWARALLDGAPRVGADRAREIVAMLSADVARGTGDDLPARWR
ALRRGEDSRATARWREETKRLGRGASSSAPADGPADPGARQVPDDLAVGIVVGLAYPERV
ARVRRADATTYQMAGGTGAALDQQSPLRSSTWLAVAVADRAPGQADARIRSAAPIDERTA
RDVAGDLVATTDRIRWEDGGIVTRRVEALGAIVLDDVPLARPDPLLVQEAVRDGIRRGGL
SVLPWSPAATALRERLAFCHAHLGAPWPPVDDDALLARLDGWLDADLAAVRGARDLARID
VASALRRLLPWPAATRFGEFAPERLRVPSGSEVRLAYDGAEPPVLAVKLQEVFGWTTVPT
VADGRVPVVLHLLSPARRPVAVTSDLASFWRQGYSQVRADLRARYPRHPWPDDPLAAVPT
GRAKPRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtggagggtgacgagagcgtgctgctccccgggccgtcggcgccgggggccgacctgccg
gtgcgggcggccctgcccgccaccgtcgacgcggtgcgctccggtggcgccgcggtgctg
gtcgcgccgcccgggtcggggaagacctcgctgctgccgctcgccctggccgacgcgctc
ggggggacgatcgtcgtcgccgagccacgtcggctggcgacgcgcgcggcggccacccgg
ctcgcgacgctggtcggcgagccgctcgggcagcggatcggctacgcgatgcgcggcgag
cgcagcggcgggcggggcctccgcgtcgaggtggtgacgacggggctcctcgtccggcgg
ctgcagcgggacccggagctgccgggcgtgtccgcgatcgtgatcgacgagtgccacgaa
cgccacctcgacgccgatctgctcctcgcgctcgccgtcgacgtccgggcgaacctccgg
gacgacctggcgatcgtcgcgacctcggccacggcggacacggcgaggctgagccgtgcc
ctgggcacggacgtcccggcacccgtgatcaccgcgaccgcggcgctgttcgacgtggcg
gtcgagtgggcaccaccaccggtgcccgcgccgctgctccccggggggcgggtcgacccg
cggatgctggaccacgtcgcggccgtcgtccggcgtgccctggccgagaccgacggcgac
gtcctcgtgttcgtgccgggggaggccgagatccacggcgtggcacggcggctggccggc
catgacgtgctgccgttgttcggtcgtcagtcgcgggccgagcaggaccgcgcgctcacg
ccgaccgccacccggcggatcgtggtcaccacgtcggtcgcggagagctcgctgaccgtg
cccggggtcagggtcgtggtcgacgcgggtctctcccgggagccgcggaccgaccagtcc
cgcggcctcggggcgctggtcacctgccgggtctcgagatcgtccgccgaccagcgtgcg
ggccgcgccgggcgcgaggggcccggccgggtctatcggtgctggtccgccacggaccac
gcgcggctcgacgagcacccggcgccggagatcgcgatcggcgacctggcagccttcgcc
ctcgagctcgcggcgtggggtgcgcccgccggcgacggcctgaccctgctcgacgcgccg
ccggtgacggcgatgaccgcggccgtcgagctgctgcggcgtgtcggtgccgtcgacgac
gacggccggatcacccgccgcggccgccagatggcggcgatcggggtgcatccccggtgg
gcccgtgcgctgctggacggggcgccacgggtcggcgccgaccgggcgcgcgagatcgtc
gcgatgctctcggccgacgtcgcccgcggcacgggcgacgacctgccggcccggtggcgg
gccctgcgccgtggtgaggacagcagggcgacggcccgctggcgggaggagacgaagcgc
ctcggtcgcggcgcgtcgagcagcgccccggcggacgggcccgccgaccccggggcgcgc
caggtgccggacgacctcgcggtggggatcgtggtgggtctggcctacccggaacgggtc
gcgcgggtccggcgggccgacgcgaccacctaccagatggccgggggcacgggtgcggcg
ctggaccagcagtcaccgttgcggagctcgacctggctggcggtcgcggtggccgaccgg
gcacccggtcaggccgacgcccggatccgctccgcggcgccgatcgacgagcggaccgcg
cgggacgtcgccggagacctcgtggcgaccaccgaccggatccgttgggaggacggcggg
atcgtgacgcggcgcgtcgaggcgctcggcgcgatcgtgctcgacgacgtcccgctcgca
cggcccgacccgctgctcgtccaggaggccgtccgtgacgggatccggcgcggcgggctg
tcggtgctgccgtggtcgccggccgcgaccgcgttgcgggagcggctcgcgttctgccac
gcccacctcggcgcgccctggcccccggtcgacgacgacgcactgctggcccgcctcgac
ggctggctggacgccgacctcgctgcggtgcgcggcgcgcgcgacctcgcccgcatcgac
gtggcgtcggcgctgcgccgactgctgccctggcccgcggcgacccggttcggcgagttc
gcgccggagcggctccgggtcccgtcgggctcggaggtgcggctcgcgtacgacggcgcg
gagccgccggtgctcgccgtcaagctgcaggaggtgttcggctggaccacggtcccgacc
gtcgcggacgggcgtgtcccggtcgtcctgcacctgttgtcgcccgcccggcgcccggtc
gcggtcacgagcgacctcgcgtccttctggaggcaaggctactcccaggtccgtgccgac
ctgcgggcccgctacccccgccatccgtggccggacgacccgctcgccgcggtcccgacc
gggcgggccaagccccgacggtga
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