Isoptericola dokdonensis: I598_0610
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Entry
I598_0610 CDS
T04384
Symbol
deaD_1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ido
Isoptericola dokdonensis
Pathway
ido03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I598_0610 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ido03019
]
I598_0610 (deaD_1)
03009 Ribosome biogenesis [BR:
ido03009
]
I598_0610 (deaD_1)
Enzymes [BR:
ido01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I598_0610 (deaD_1)
Messenger RNA biogenesis [BR:
ido03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I598_0610 (deaD_1)
Ribosome biogenesis [BR:
ido03009
]
Prokaryotic type
rRNA helicases
I598_0610 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
FKRP_N
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANC30190
UniProt:
A0A161IJ65
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All DBs
Position
complement(635543..637354)
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AA seq
603 aa
AA seq
DB search
MSNDTTLPTEAQPTFADLALPAALQAAVDDLGFTTPSPIQAEAIPALLAGRDITGVAQTG
TGKTAAFGIPLLAAVDPAADVSRGHVQALVLAPTRELAMQVADAVESFATHLPGVHVLPV
YGGAPYVPQQRALRDGVHVVVGTPGRVMDHLERGSLHLDTVKFLVLDEADEMLRMGFAED
VEKIFGQAPAERQVALFSATMPPAIRSVADTHLTNPVQVAVSRQSSTVTSVEQTYAVVPF
RHKVGSLVRVLATSEADATIVFTRTRAAAEEVGVALVERGVSAATISGDVAQKEREKIVE
RLRNGSLDVLVATDVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAMSFV
TPQERGKLKHIERTIRAKLTEVEVPSPRDVSAHRARTILGTVPARLEAGRLDLYTELLAE
HLAPREDGTAPDAAQVAAALLALAVGDDGPAHTAAQEAHEKERAEVKGGRTRETHRAERV
DRDGDRTGRHPRSEHGRDDRGRGIRRPAEGTRYRISVGHTHGAQPRGIVGALTNEGGLRG
ADIGKIDIFGNFSLVDITTPLDDGQMNRLGRANVAGRQLRISLDKGAPERRAPHTERRPA
RQY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgacaccaccctgcccaccgaggcccagcccaccttcgccgacctcgccctg
cccgcagcgctgcaggcagcggtcgacgacctcggcttcaccaccccctcccccatccag
gccgaggcgatccccgccctgctggccggacgcgacatcaccggcgtcgcccagaccggc
accggcaagaccgcagccttcggcatcccgctgctcgccgccgtcgaccccgccgccgac
gtctcccgcggtcacgtccaggcgctcgtcctggccccgacccgcgagctcgccatgcag
gtcgccgacgccgtcgagagcttcgccacccacctgcccggcgtgcacgtcctgcccgtc
tacggcggcgcgccctacgtgccccagcagcgcgccctccgcgacggcgtccacgtcgtc
gtcggcacccccggccgcgtcatggaccacctcgagcgcggctcgctgcacctcgacacc
gtcaagttcctcgtcctcgacgaggccgacgagatgctccgcatgggcttcgccgaagac
gtcgagaagatcttcggccaggcccccgccgagcgccaggtcgccctgttctccgcgacc
atgccgcccgccatccgctccgtcgccgacacccacctcaccaaccccgtgcaggtcgcc
gtctcccggcagtccagcaccgtcacctccgtcgagcagacctacgcggtcgtgccgttc
cggcacaaggtcggctccctggtccgcgtcctggccacctccgaggccgacgccaccatc
gtcttcacgcggacccgcgccgcggccgaagaggtcggcgtcgccctcgtcgagcgcggc
gtctccgccgccaccatctccggcgacgtcgcccagaaggagcgcgagaagatcgtcgag
cggctccgcaacggctcgctcgacgtcctcgtcgccaccgacgtcgccgcccgcggcctc
gacgtcgaccgcatcgggctcgtcgtgaacttcgacatcccccgcgaggccgaggcctac
gtgcaccgcatcggccgcaccggccgcgccggtcgcaccggccgcgccatgtcgttcgtc
accccccaggagcgcggcaagctcaagcacatcgaacgcaccatccgcgccaagctcacc
gaggtcgaggtgccctccccccgcgacgtgtccgcacaccgggcacgcaccatcctcggc
accgtgcccgcgcgactcgaggcaggacgcctcgacctgtacaccgagctcctcgccgag
cacctcgcgccccgcgaggacggcaccgcacccgacgccgcacaggtggcggccgcgctc
ctggcgctcgcggtcggcgacgacggccccgcgcacaccgcggcccaggaggcgcacgag
aaggagcgcgccgaggtcaagggtggccgcacgcgcgagacccaccgcgccgagcgcgtg
gaccgcgacggcgaccgtaccggccggcacccccgctccgagcacggccgtgacgaccgc
ggccgcggcatccgtcgccccgccgagggcacccgctaccgcatctcggtgggccacacg
cacggcgcgcagccgcgcggcatcgtgggcgcgctgacgaacgagggcggtctgcgcggc
gccgacatcggcaagatcgacatcttcgggaacttctccctggtcgacatcaccacgccg
ctcgacgacggccagatgaaccgcctgggtcgcgcgaacgtcgcgggccgccagctgcgc
atctcgctggacaagggcgccccggagcgtcgggcgccgcacacggagcgtcgtcccgcc
cgccagtactga
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