Isoptericola dokdonensis: I598_2468
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Entry
I598_2468 CDS
T04384
Symbol
pel_1
Name
(GenBank) Pectate trisaccharide-lyase precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ido
Isoptericola dokdonensis
Pathway
ido00040
Pentose and glucuronate interconversions
ido01100
Metabolic pathways
ido02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
I598_2468 (pel_1)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
I598_2468 (pel_1)
Enzymes [BR:
ido01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
I598_2468 (pel_1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Trypan_PARP
F5_F8_type_C
AvrPto
Motif
Other DBs
NCBI-ProteinID:
ANC32005
UniProt:
A0A161I2Q2
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All DBs
Position
complement(2619652..2622366)
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AA seq
904 aa
AA seq
DB search
MRRSVASKILAAGATVAVAGAVGFTTLMPAAADVTGSATGFATQNGGTTGGAGGQTVRAT
TGTQIHAALCNRAADDTPIIIEVEGTINHGNTSKVSGDSCNTADGVIELKQISNVSIVGV
GSGATFDQLGIHIREAENIIIQNVTVKNVKKSGSPTSNGGDAIGMESGVRNVWVDHVSLE
ASGGESEGFDGLFDMKADVKYVTLSYSTLKNSGRGGLVGSSESDTANSFITFHHNLYQNI
DSRTPLLRGGVAHIYNNHYVQLNESGINSRAGARAKVEDNYFKDSKDVLGTFYTDEPGTW
DVDGNIFDNITWSPKSGDINPAGPNVTSTTSVSVPYSYSTDAANCVPSVVAATAGANKGM
KVSDGSCSPVTPTATPTSEPTSEPTSEPTSEPTEQPEPTTGTIYVAPNGSASAAGTLAAP
TTLASAITRVASGGEIFLRGGTYNLSQTVTIQPGNDGKSTDRTLLSAYPGEKPVLNFSAQ
AEDSANRGLAIGGDWWHVYGIVVEHAGDNGILLGGNNNIIERVVTRHNADTGLQLSRLVA
GAPSSEWPSNNLILSSESHDNVDSDGEDADGFAAKLTSGPGNVFRNTVAHHNIDDGWDLY
TKSDTGPIGTVTIENSLAWENGTLSNGGQAGNGDRNGYKLGGEDIPVNHTIRNSYAVDNG
KHGFTYNSNPGSITVANNVAVGNAQRNFSFDEGTHRYSGNTSCDSGSNDKTVGTDQGGNQ
FDTGSNGSRCAGYSGELGWSFAADGTLQVTFGGSNPNPQPTPTPTPTPTPDPTPTPDPTT
PPTGTNLSIGAGSDGSSKASGTSYGNVRDGSLSTYWSPSGSTGTISIKWDSAKTVSKVVV
KTASGSGSITGWQIVNNDNGAVLKSGTGAPGTVSFTATSTNKVSLVITGASGTPRIAELE
TYTS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgatcagtcgcttccaagatcctcgcagccggggccacggtggccgtggccggc
gcggtgggattcacgaccctcatgccggcagcggccgacgtgaccggcagcgccacgggc
ttcgccacgcagaacggtggcacgaccggcggcgccggcggccagacggtgcgcgcgacg
accggcacgcagatccacgcggccctgtgcaaccgggccgccgacgacacgccgatcatc
atcgaggtcgagggcaccatcaaccacggcaacacctcgaaggtgtccggcgactcctgc
aacaccgccgacggggtgatcgagctcaagcagatcagcaacgtctcgatcgtcggcgtc
gggagcggtgcgacgttcgaccagctcggcatccacatccgtgaggccgagaacatcatc
atccagaacgtcaccgtcaagaacgtcaagaagtcgggctccccgacctcgaacggcggc
gacgcgatcggcatggagtccggcgtccgcaacgtgtgggtcgaccacgtgagcctggag
gcctcgggcggcgagtcggagggcttcgacggcctcttcgacatgaaggccgacgtcaag
tacgtgacgctgtcctactcgacgctgaagaactcgggtcgcggaggcctcgtcggctcc
agcgagtccgacacggcgaacagcttcatcacgttccaccacaacctgtaccagaacatc
gactcgcggaccccgctgctgcgcggcggcgtcgcccacatctacaacaaccactacgtc
cagctgaacgagtccgggatcaactcccgggccggggccagggccaaggtggaggacaac
tacttcaaggactccaaggacgtcctcggcacgttctacaccgacgaaccgggcacgtgg
gacgtcgacggcaacatcttcgacaacatcacctggtcgccgaagtcgggggacatcaac
ccggccggtccgaacgtcacctcgacgacgtccgtctccgtcccctactcgtactccacg
gacgccgcgaactgcgtgccgtcggtcgtggccgccacggccggggcgaacaagggcatg
aaggtctccgacggatcgtgctcgccggtcaccccgaccgcgacgcccacgtccgagccc
acctcggagcccacgtcggagccgacgtccgagcccaccgagcagcccgagccgacgacg
ggcacgatctacgtcgccccgaacggctccgcgagcgcggccggcaccctcgccgccccc
acgacgctcgcctcggcgatcacccgcgtcgcgtccggcggggagatcttcctgcgcggc
ggcacgtacaatctgtcgcagacggtgacgatccagccgggcaacgacgggaagtcgacc
gaccgcaccctgctgtcggcgtaccccggcgagaagccggtgctgaacttctcggcgcag
gccgaggactcggccaaccgcggcctcgccatcggtggcgactggtggcacgtctacggc
atcgtcgtcgagcacgccggggacaacggcatcctgctgggcggcaacaacaacatcatc
gagcgcgtcgtgacccgtcacaacgccgacaccggcctgcagctctcccgcctcgtcgcg
ggggcgccgtcgagcgagtggccgtccaacaacctcatcctctccagcgagtcgcacgac
aacgtcgactcggacggcgaggacgcggacggcttcgccgcgaagctgacctccggcccg
ggcaacgtgttccgcaacaccgtcgcgcaccacaacatcgacgacggctgggacctgtac
acgaagtccgacaccggccccatcggcacggtcaccatcgagaactccctcgcgtgggag
aacggcacgctgtccaacggcggccaggccggcaacggcgaccgcaacgggtacaagctc
ggtggcgaggacatcccggtgaaccacaccatccgcaactcgtacgcggtggacaacggc
aagcacgggttcacctacaactcgaacccgggctcgatcacggtcgcgaacaacgtcgcg
gtgggcaacgcccagcgcaacttctccttcgacgagggcacccaccggtacagcgggaac
acctcctgcgactcgggctcgaacgacaagacggtcggcaccgaccagggcggcaaccag
ttcgacaccggttcgaacgggtcgcgctgcgcgggctactccggtgagctcggctggtcg
ttcgcggcggacggcaccctccaggtgaccttcggcggcagcaacccgaacccgcagccg
accccgacgccgacccccaccccgacgccggacccgacccccacgccggacccgacgacc
ccgccgaccggcaccaacctgtcgatcggcgccggctcggacgggtcgagcaaggccagc
gggaccagctacggcaacgtccgtgacggcagcctgtcgacctactggtcgcccagcggc
tcgaccggcaccatctccatcaagtgggactcggcgaagaccgtctcgaaggtcgtcgtg
aagacggcgtccggcagcggctccatcaccgggtggcagatcgtcaacaacgacaacggg
gccgtgctgaagtccggcacgggcgcgcccggcacggtgagcttcaccgcgacgtcgacg
aacaaggtcagcctcgtcatcaccggcgcgtcgggcaccccccggatcgccgagctcgag
acctacacgagctga
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