Isoptericola dokdonensis: I598_3222
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Entry
I598_3222 CDS
T04384
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ido
Isoptericola dokdonensis
Pathway
ido03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I598_3222 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ido03400
]
I598_3222 (mfd)
Enzymes [BR:
ido01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I598_3222 (mfd)
DNA repair and recombination proteins [BR:
ido03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I598_3222 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
LSDAT_prok
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANC32732
UniProt:
A0A161HSY3
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All DBs
Position
3490615..3494238
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AA seq
1207 aa
AA seq
DB search
MNLTGIVPALLADPGAAAALEAVPSGGEVDVVGPKGVRAPLLAAAAQQRPLVVVTATGRD
ADELAASLRAYLPDDRADDVAVLPAWETLPHERLSPRADTVAKRLAVFRRLAHPTVGTSQ
SGPVRVLVMPVRALLQPVVDGLGELVPVELATGSTADLTDVAERLVAAAYARVDMVERRG
EFAVRGGILDVFPPTEDHPLRIEFWGDEVTEIRWFSVADQRSLEVADQGLWAPPCREILL
TDAVRQRAADLVTDLPGATDMLDRLAAGVAVEGMESLAPVLVDRMVPVLDLVADDALLVL
DEPERVRRRAHDLVATTEEFLAAAWTSAVAGADSPIDLSSASFATFAETRDVAARRGLGW
WTLSAFSLDAAEAAGAVPEGETPAPVTTSADGTTITVAARDVESYRGDVERALDDVKGLQ
RAGWRLVLTTEGPGPARRMVEQLGAVDTAARLSTDLTDAPEGGVVHVVPALVGKGFVAPE
LRLAVFSEADLTGRQGSTTRDMRKMPSRRRNVVDPLQLKAGDFVVHEQHGVGRFEEMVQR
TLGAGANAATREYLVIEYASSKRGHPGDRLFVPMDQLDQVTKYTGGESPSLSKMGGADWK
NTKARARKHVKEIASELIRLYSARMATEGHAFGPDTPWQRELEDAFAYVETPDQLSTIDE
VKADMEKSVPMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHFDTFSE
RYAGFPVTVRALSRFQGAKESADTIEGLRTGTVDVVIGTHRLITGAVRFKDLGLVVVDEE
QRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLQTPPEERHPVLTYVG
AYEERQIAASVRRELLREGQVFYIHNKVESIDRTAARLRELVPEARVGVAHGKMSESQLD
QVIRGFWEKELDVLVCTTIVETGLDISNANTLVLERADTFGLSQLHQLRGRVGRGRERAY
AYFLYPPERPLTETAHDRLATMAAHTDLGAGMQIAMKDLEIRGAGNLLGGEQSGHIAGVG
FDLYVRMVGEAVRAYKGEADAEEPEVTIELPVDAHLPETYIATERLRLEAYKKIASARDA
AALAEIRAELVDRYGKLPDVTEALFEVAEFRNHARRAGLTDVTAQGKHIRFAPVDLPESA
QMRLKRLYPGTILKPAIRAVLVPYPTTARIGGKPLRGAALLAWARQLIDAVVLGDVASAA
TVGTAAR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggtatcgtccctgccctgctcgccgaccccggcgcggcggccgcgctg
gaggccgtcccgagcgggggagaggtcgacgtcgtcggcccgaagggggtgcgcgccccg
ctgctggcggcggccgcgcagcagcgcccgctggtggtggtgacggcgacgggccgggac
gcggacgagctcgcggcgagcctgcgcgcctacctgccggacgaccgcgccgacgacgtc
gcggtgctgccggcgtgggagacgctgccgcacgagcggctgtccccgcgcgcggacacg
gtggcgaagcggctggccgtgttccgtcgcctcgcgcacccgacggtcgggacgagccag
tcgggtccggtgcgggtgctggtgatgccggtgcgtgccctgctgcagccggtcgtcgac
gggctgggcgagctggtgccggtggagttggccacggggtcgacggcggacctgacggac
gtcgcggaacggctggtcgcggcggcgtacgcgcgggtcgacatggtggagcggcgcggc
gagttcgcggtccgcggcgggatcctcgacgtgttccccccgacggaggaccacccgctg
cgcatcgagttctggggcgacgaggtgacggagatccgctggttctccgtggcggaccag
cggtccctggaggtcgccgaccagggtctgtgggcgccgccgtgccgggagatcctgctg
acggacgcggtgcggcagcgcgcggcggacctggtgaccgacctgccgggcgccacggac
atgctcgaccggctggcggcgggcgtcgcggtcgagggcatggagtccctcgcaccggtg
ctggtggaccgcatggtcccggtgctggacctggtggccgacgacgcgctgctcgtgctc
gacgagcccgagcgggtccggcggcgcgcccacgacctggtggccacgaccgaggagttc
ctcgccgcggcgtggacgtccgcggtggcgggcgcggacagcccgatcgacctgtcgtcg
gcgtcgttcgcgacgttcgccgagacccgtgacgtcgcggcccggcgcgggctgggctgg
tggacgctgtccgcgttctcgctcgacgcggccgaggccgccggagccgtgccggagggt
gagacgccggcaccggtcacgacgtccgccgacggcacgacgatcacggtcgcggcccgc
gacgtggagtcgtaccgcggggacgtggagcgcgccctggacgacgtcaagggactgcag
cgggccggctggcggctcgtgctcaccaccgagggccccggcccggcgcgccgcatggtc
gagcagctcggcgcggtggacaccgccgcgcggctgtccaccgacctcaccgacgccccc
gagggcggagtggtgcacgtcgtgccggccctggtcggcaagggtttcgtcgcgccggag
ctgcggctcgccgtcttcagcgaggccgacctgacgggccgccagggctccacgacccgc
gacatgcgcaagatgccgtcgcggcgccgcaacgtcgtcgacccgctccagctcaaggcc
ggggacttcgtggtgcacgagcagcacggcgtgggccggttcgaggagatggtgcagcgc
accctcggtgcgggcgccaacgcggcgacccgcgagtacctcgtcatcgagtacgcgtcc
tccaagcgcgggcacccgggcgaccggctgttcgtccccatggaccagctcgaccaggtg
accaagtacaccggcggcgagtcgccgtcgctgtccaagatgggcggcgcggactggaag
aacaccaaggcccgggcccgcaagcacgtcaaggagatcgcgagcgagctcatccgcctc
tactcggcgcgcatggccactgaggggcacgcgttcggcccggacaccccgtggcagcgc
gagctggaggacgccttcgcctacgtcgagaccccggaccagctctccaccatcgacgag
gtcaaggccgacatggagaagtcggtgcccatggaccggctcatctgcggcgacgtcggc
tacggcaagacggagatcgcgatccgggcggcgttcaaggcggtgcaggacggcaagcag
gtcgccgtcctggtcccgacgacgctgctcgtccagcagcacttcgacacgttctccgag
cggtacgcaggcttccccgtcaccgtgcgggcactgtcccggttccagggcgccaaggag
tccgcggacaccatcgaggggctgcgcaccggcacggtcgacgtcgtcatcggcacccac
cgcctcatcaccggcgcggtgcggttcaaggacctgggcctggtcgtcgtcgacgaggag
cagcggttcggcgtcgagcacaaggagacgctcaagcagctgcgcaccaacgtcgacgtc
ctcgcgatgtccgccacgcccatcccgcggaccctggagatggccgtcaccggcatccgc
gagatgtcgaccctccagaccccgcccgaggagcggcaccccgtgctcacctacgtcggc
gcgtacgaggagcggcagatcgcggcgtccgtgcggcgcgagctgctgcgcgagggccag
gtattctacatccacaacaaggtggagtccatcgaccgcacggcggcccggctgcgcgag
ctcgtccccgaggcccgcgtgggcgtcgcccacggcaagatgagcgagagccagctcgac
caggtcatccgcggcttctgggagaaggagctcgacgtgctggtctgcaccaccatcgtc
gagaccggcctggacatctcgaacgccaacacgctcgtcctggagcgcgccgacacgttc
ggcctgtcccagctccaccagctccggggccgcgtcggccggggccgcgagcgcgcctac
gcgtacttcctctacccgccggagcgccccctcaccgagaccgcgcacgaccggctcgcc
accatggccgcccacacggacctcggcgcgggcatgcagatcgccatgaaggacctcgag
atccgtggcgccggcaacctgctcggtggtgagcagtccggccacatcgcgggcgtcggc
ttcgacctgtacgtccgcatggtcggggaggccgtgcgcgcgtacaagggggaggccgac
gcggaggagcccgaggtcaccatcgagctgcccgtcgacgcgcacctgcccgagacgtac
atcgccaccgagcggctgcggctcgaggcgtacaagaagatcgcgtcggcgcgcgacgcg
gcggcgctcgcggagatccgcgccgagctggtcgaccggtacggcaagctgcccgacgtc
accgaggccctcttcgaggtcgcggaattccgcaaccacgcgcgccgcgccggcctgacg
gacgtcaccgcgcagggcaagcacatccggttcgccccggtcgacctgcccgagtcggcg
cagatgcgcctcaagcggctctacccgggcaccatcctcaagcccgcgatccgcgccgtg
ctcgtcccgtacccgacgacggcccgcatcggcggcaagccgctgcgcggtgcggcgctg
ctggcgtgggcgcggcagctcatcgacgccgtggtcctcggggacgtcgcgtcggcggcg
acggtggggaccgccgcccgctga
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