Idiomarina sp. PL1-037: U0358_01855
Help
Entry
U0358_01855 CDS
T10248
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
idp Idiomarina sp. PL1-037
Pathway
idp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
idp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0358_01855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idp03021
]
U0358_01855 (rpoC)
03400 DNA repair and recombination proteins [BR:
idp03400
]
U0358_01855 (rpoC)
Enzymes [BR:
idp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0358_01855 (rpoC)
Transcription machinery [BR:
idp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0358_01855 (rpoC)
DNA repair and recombination proteins [BR:
idp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0358_01855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF2267
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WQC53322
LinkDB
All DBs
Position
386596..390831
Genome browser
AA seq
1411 aa
AA seq
DB search
MKDLLKLLKPTNQAEEFDGIRIALSSPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEGGLTSLEQGQILTEDEYLDALEEHGDEFDAKM
GAEAVLDLLRAVDIEGDVQKLREELPETNSETKRKKISKRLKLLEAFQVSNNKPEWMILK
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVERETAEVWDVLDEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTKEKINGKGEGMVFKDPNEVEKAYRTG
QVELHSRVRVRITDTTIDDDGIRTTKTELRDTTCGRAILSLIMPEGLPFELINQAMGKKP
IGRMLNTAYRDLGLKDTVVFADQIMYTGFHYAMVSGASVGINDMVIPEAKKEIVSAAEEE
VAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSKEIVKNKDGEDEEQASFN
SVFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVIMEEDCGTYEGLYMKPLIEGGDVVEPLRERVL
GRVLCEPVMKPGSEEELLPRNTLLDEKMCDLLEENSIDEVKVRSVITCDTDFGVCAHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENNIQVKNPGTIKL
HNAKWVVNSDKAHVITSRSTELTLTDEYGRERERYKVPYGAVLKKGEGDSVDGGETVANW
DPHTHPIITEVEGRIKFVDLIDGVTMTRQTDELTGLSSIVVLETGQRTSAGKDMRPMVKL
VDGKGNDVNIAGTDIPAQYFLPGNAIINLEDNSEVKIGDTLARIPQEGSKTRDITGGLPR
VADLFEARKPKEPAILAEKTGTVSFGKETKGKRRLLITPTDGGDQHEEMIPKWRQLNVFE
GEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKINDKHIETIVRQM
LRKALILRAGDTNLLEGEMVEMSEVLAANAKAEADGKKPAIFERQLLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKKDSLRGLKENVIVGRLIPAGTGYSYHKERMQRRLDELNVD
IEPTMTAEQAEQQLADALNAGNSSAGDDSAE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttgctgaagcttttaaagccgacgaatcaggcagaagagtttgatggtatt
cgcatcgctctttcgtctccagatatgatccgtagttggtcatatggtgaggtgaaaaaa
cctgaaactattaactaccgtacctttaagccggaacgtgatggtttgttctgtgcccgt
atttttggtccggtaaaagactatgagtgcttgtgtggtaaatacaagcgccttaagcac
cgtggtgtcatctgtgagaagtgtggcgttgaagttacactgactaaagtgcgtcgtgag
cgtatgggtcatattgaactggcaagcccggttgctcacatctggttccttaagtcattg
ccgtcgcgcattggcttaatgttggatatgactctgcgtgatattgagcgcgtactgtat
ttcgagtcttacgttgttactgaaggcggtttaacgtctcttgagcagggtcaaatcctg
acagaagacgaatatttagacgcgcttgaagagcacggtgatgaattcgacgctaaaatg
ggtgcagaagccgttctggatctgttgcgcgcggtagacatcgagggcgacgtacaaaaa
ctgcgtgaagagttgcctgagacaaactcagaaaccaaacgtaagaaaattagcaaacga
ctgaagctactagaagcattccaggtatcaaacaacaaacctgagtggatgatcttaaag
gtacttcctattctgccaccagacttacgtccgttggtaccgcttgatggcggtcgtttt
gcaacgtccgatcttaatgacttgtaccgccgtgtcattaaccgtaacaaccgtttgaag
cgcctgttagaccttgctgcaccagatattattgtgcgcaacgaaaaacgtatgcttcag
gaagcggttgatgcgttgctggataacggtcgtcgcggtcgtgctattactgggtcaaac
aagcgtcctctgaaatctttggctgacatgatcaaaggtaaacagggtcgtttccgtcag
aaccttctgggtaagcgtgttgactattcaggccgttcggtaattaccgtcggtcctaaa
ttgcgcctgcaccagtgtggtttgcctaagaaaatggcgctggaattattcaaaccattt
atctatggcaaattagagcgtcgtggtttagcgacaaccattaaagctgcgaagaaaatg
gttgagcgagagacagctgaggtttgggacgtacttgatgaggtcatcaaagagcaccca
gtaatgcttaaccgtgcaccgacactgcataggttgggtattcaggcgttcgaaccggta
ttgattgaaggtaaagcgattcaattgcacccattggtctgtgcggcttataacgccgac
tttgatggtgaccaaatggctgtgcacttgccactgactttagaagctcagctggaagct
cgcgcgttgatgatgtctaccaacaacgtattgtcgccggcaagtggtgaccctattatt
gttccttcgcaggacgttgtgcttggtctgtattacatgactaaagaaaaaatcaacggt
aaaggcgaaggcatggttttcaaagatccgaacgaggtcgaaaaggcttatcgtacgggc
caggttgaattgcatagtcgcgtccgggtacgtattaccgacaccaccattgacgacgac
ggcattcgaacaacgaaaactgaattgcgtgatacgacttgtggtcgtgcaattttgtca
ctgattatgccggaaggtctgccttttgaactgatcaaccaggctatgggtaaaaagccg
attggtcgtatgctgaatactgcttaccgtgaccttggtttgaaagataccgtcgttttc
gctgaccaaatcatgtataccggtttccattacgcaatggtatcgggtgcgtcggttggt
ataaacgacatggttattcctgaagctaagaaagagattgtttctgcagcagaagaagaa
gtagctgaaattcaggaacagttcgaatcaggcttggttactgctggtgagaaatacaac
aaagttatcgatatttggtcaactgctaacgagaaagtctcgaaagcaatgatggataac
ttgtcgaaagaaatcgttaaaaacaaagacggtgaagacgaagaacaagcatcatttaac
tcagtctttatgatggcggactcaggcgctcgtggtagtcccgcgcagattcgtcagttg
gccggtatgcgtggtttgatggctaagccagacggctcaatcatcgaaacgccaatcgta
gctaacttccgtgaaggtctgaacgtacttcaatacttcatctcgacgcacggtgctcgt
aaaggtttggctgatacggcattgaaaacagcgaactcaggttacctgactcgtcgtttg
gtagacgtttcacaagacgttgtgatcatggaagaagactgtggcacatacgaaggtctt
tacatgaaaccgctgattgaaggtggcgacgttgtagagccgctgcgtgaacgtgtactt
gggcgtgttctttgtgagcctgttatgaagccgggtagtgaagaagagttgcttccacgc
aacacattgcttgatgaaaaaatgtgtgacctgttggaagaaaactctatcgacgaagtt
aaagttcgctcggttattacctgtgatacagactttggtgtttgtgcacattgttatggt
cgtgacctggctcgcggacatatggtcaaccaaggtgaagccgttggcgttatagcagcg
cagtcaatcggtgaaccgggtacacagttaaccatgcgtaccttccacattggtggtgcg
gcatctcgtgcaacagctgaaaacaatatccaggtgaagaacccgggtacaattaagctg
cacaacgcgaaatgggttgttaacagcgataaagcgcacgttattacgtcacgttctaca
gagttaactttgactgatgaatacggtcgtgagcgcgagcgttataaagtaccttatggt
gcggtcttgaaaaaaggcgaaggtgactcagtagatggcggcgaaaccgttgcaaactgg
gacccgcatactcacccaatcattaccgaggtagaaggtcgcattaagtttgttgattta
attgacggtgtcactatgacgcgtcaaaccgatgaactgacaggtctctcaagcatcgtt
gtactggaaacgggtcagcgtaccagtgccggtaaagacatgcgtccaatggttaaattg
gttgatggtaaaggtaacgacgttaacatcgctggtactgatatccctgcgcaatacttc
ttgccaggtaacgccatcatcaacctggaagataattccgaggttaaaattggtgacacc
ttagcgcgtattcctcaggaaggctctaagactcgtgatattaccggtggtctgccacgt
gttgctgacttgttcgaagcgcgtaagccaaaagaaccagcgattcttgcagagaaaacc
ggtacggtttccttcggtaaagaaaccaaaggtaagcgtcgcctattgattacaccaaca
gatggtggtgatcagcacgaagagatgattccgaaatggcgtcagctgaacgtgtttgaa
ggtgaacaagtgactaaaggtgaagttattgccgatggtccagaagcaccgcacgacatt
ctacgtttacgtggcgttagtgcagtggctaactatatcgttaacgaagtgcaggaagtt
taccgcctgcaaggtgttaaaattaacgataagcacattgaaactatcgttcgccagatg
ttgcgtaaggcactgattttacgtgctggcgatacgaacttgctggaaggcgagatggtt
gaaatgtcagaagtgttagccgctaacgcgaaagcggaagcggatggtaagaaaccagcg
atatttgaacgtcagttgctggggattactaaggcatcgttgtcaactgaatcctttatt
tcagcggcttcgttccaggaaacaacgcgagttcttaccgaagcagcggttggtggtaag
aaagacagcttacgcggactgaaagaaaacgtaattgttggtcgtctgattcctgcaggt
acgggttactcatatcacaaagagcgcatgcagcgtcgactggatgaactgaatgttgat
atcgagccaaccatgactgcagagcaggctgagcaacaacttgcggatgccttaaatgct
ggaaatagttctgcaggtgacgattctgcagaataa
DBGET
integrated database retrieval system
