Idiomarina sp. PL1-037: U0358_05085
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Entry
U0358_05085 CDS
T10248
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
idp Idiomarina sp. PL1-037
Pathway
idp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0358_05085 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idp03019
]
U0358_05085 (pnp)
03016 Transfer RNA biogenesis [BR:
idp03016
]
U0358_05085 (pnp)
Enzymes [BR:
idp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U0358_05085 (pnp)
Messenger RNA biogenesis [BR:
idp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U0358_05085 (pnp)
Transfer RNA biogenesis [BR:
idp03016
]
Prokaryotic type
tRNA degradation factors
U0358_05085 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
OB_RRP5_4th
S1_2
DUF2554
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WQC53927
LinkDB
All DBs
Position
1120043..1122193
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AA seq
716 aa
AA seq
DB search
MNPITKQFQYGQHTVTLETGVIARQATGSVLASIDDTTVLVTVVAKKEAREGQNFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPDGFMNEVQVVATVVSVN
PQINPDIVALIGASAALSISGAPFAGPIGAARVGVVNDEYVLNPTADELENSKLDLVVAG
TDKAVLMVESEAELLSEDQMLGAVMYGHEAMQDVIKAITEFTAEAGKEKWDWQAPAKDES
LQTKIRELAEQGIGEAYRTTDKAERKGKLDQVKEQMVEKLTAEDENVDLEEAGKIFHDLE
SDIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSSLFTRGETQALVTATLGTDRD
AQMIDELTGMNTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGIQAVMPSHDEF
PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI
LGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEAI
GGHREELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKVAASD
QADADAAIEKIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND
VNEYLKVGDVVPVKVLEIDRQGRVRLSMKEAAEKKEEPATEAPAEPAAEEETKSEE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaataactaaacaatttcagtacggtcagcatacagtcacattagaaactggc
gtaatagcccgtcaggcgactggttctgtacttgccagcatcgatgatacaacagtcttg
gtcactgttgttgctaaaaaagaagcacgtgaagggcaaaactttttcccattaacagtc
aattaccaggaaaagacttacgcagccggtaaaattcctggcggtttctttaagcgtgaa
gggcgtcccagcgaaaatgagactttgacaagtcgcttgatcgaccgtccaattcgtcca
ttattccctgatggtttcatgaacgaagttcaagttgttgcgactgtcgtttcagtcaac
cctcaaattaaccctgacattgtcgcattaattggtgcatcagccgctttatctatttct
ggagctccttttgcaggaccaattggcgcggcacgtgttggtgtggttaatgatgaatac
gtactaaatccaaccgccgacgagctagaaaactccaagctggaccttgtggttgcgggt
acggataaagcagtattaatggttgaatcagaagctgaactgctgtctgaagaccaaatg
cttggcgccgttatgtacggtcacgaagcaatgcaggacgttataaaagccattactgaa
tttactgcagaagcaggcaaagagaagtgggactggcaggcacctgcaaaagatgaaagc
ttacagactaaaatccgtgaattggcagagcaaggtattggcgaagcctaccgcactacc
gacaaagcagaacgtaaaggcaagcttgaccaagttaaagagcagatggtcgagaagctg
actgctgaagatgaaaatgtcgatttagaagaagccggcaaaatcttccacgacctggaa
agtgacattgtccgcagccgtattattgcgggtgaaaagcgtattgatggccgcgaccct
gacatggttcgtgctattagcgtggcgactggtgtattaccgcgtactcacggttcatca
ttgtttacccgtggtgagactcaggcgctggtaacggcgactttaggtaccgatcgtgat
gctcagatgattgacgagctgaccggtatgaacaccaatcgtttcatgctgcattataac
ttccctccatactgtgttggcgaaacagggatggttggttcgccaaaacgtcgtgaaatt
ggtcatggtcgtttggctaaacgtggtattcaggcggttatgcctagccacgacgagttc
ccatacaccattcgtgttgtttcagaaattacggaatcaaacggttcaagctctatggcc
tccgtttgtggttcttcactggcgttgatggatgcaggtgtaccaatcaagtcttctgta
gcgggtattgctatgggcttggtcaaagaaggcgacaagcacgttgttctgtctgacatt
ctcggtgatgaagatcacttaggtgatatggactttaaagtagcgggtaacaccgatggt
attactgcgctgcaaatggacatcaaaattgacggcattactcgcgacatcatggaaagt
gcattagcgcaggctaaatcagctcgcttacacattctgaaagtgatggacgaagctatt
ggcggtcaccgtgaagaattgtcgacttatgcacctcgttttaccaccattaaaattgat
caggacaagatcaaagacgttatcggtaaaggcggagcggtcattcgcgagctgactgaa
tcgaccaataccaacattgagattggtgatgacggtaccatcaaagttgcagcaagcgac
caggctgatgctgacgccgctattgagaaaatcaagcagttaacggctaacgtagaagtc
ggtaaaatttaccagggtaaagtagctcgtatcgtagatttcggtgcctttgttactgtt
ttgccaggtaaagatggcttagttcacatttctcaaatagcagaagagcgtgtaaacgac
gtaaacgaatacctgaaagtaggcgatgttgttccggttaaagtactggagattgaccgt
cagggccgcgttcgtctaagcatgaaagaagctgctgagaaaaaagaagaaccagcaact
gaagcgccggcagagcctgcagctgaagaagaaaccaaaagcgaagaataa
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