Idiomarina sp. PL1-037: U0358_08010
Help
Entry
U0358_08010 CDS
T10248
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
idp Idiomarina sp. PL1-037
Pathway
idp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
idp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U0358_08010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idp03400
]
U0358_08010 (mfd)
Enzymes [BR:
idp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0358_08010 (mfd)
DNA repair and recombination proteins [BR:
idp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U0358_08010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_22
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WQC52003
LinkDB
All DBs
Position
1710262..1713744
Genome browser
AA seq
1160 aa
AA seq
DB search
MTKASVLRPPFPPAANKDLTWQELHGSSPAMAIARLIDATPGRVLIVTADANQAHRLEQE
VKYFAGEHTEYHDDITLFPDWETLPYDSFSPHQDIISDRLSVLARLPDAKRGALIVSINT
LLHRIAPTSFVQGQALQIEKGQQLDSLKLRQQLENAGYRHVNQVMEHGEFSARGSILDLY
PMGSQTPYRLDFFDDEVDTIRPFDPETQLSKAPIDGINLLPAHEFPLTKTAIERFRANYR
EHFEASTERESVYQQVSKGQLPGGIEYYLPLFFEETASLFDYLPDDTVLVTFGNIQASLE
RLWQDINHRYDQRQFDPLRPLLHPNELFLPVDNIHAGFKQYRRVRANVPAEMAQPGPTPF
LTEAVTEIAADHQQKQPFAKLKAKLEQALAKNEKVLLSAESAGRREALREIVSKLGFQVR
LCSGLDECPTQQIGLIISPIINSFYLPDAKLWFITETELFGNRVVQSRRRQQKATVSADT
LIRNLAELQAGQPVVHLDHGVGRYQGLTTLDAGNVTTEFVTIEYSGGAKLYVPVANLNVL
SRYSGGEESHAPLNKLGNDSWDKAKKRAAEKVRDVAAELLDIYARREAKPGYEFSINKED
YQRFAAGFPFEETIDQQTAIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAMRAAFIAVNEG
KQVMVLVPTTLLAQQHYENFSDRFAEQAIRVEVLSRFKTAKQSKGILEDLSNGKVDIVIG
THKLLQDNVKCHDLGLLIVDEEHRFGVRQKDTIKRLRADVDILTLTATPIPRTLNMAMNN
IRDLSIIATPPAKRLAVKTFVREYDEPTVREAILREILRGGQVYFLHNNVDTIEKTAAEI
EALVPEARVVVAHGQMRERDLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRAD
HLGLAQMHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAISQLEDLGAGFMLATHD
LEIRGAGELLGDDQSGQIESIGFTLYMDMLEQAVKALKEGKEPALAQLLHERAEIDLKLP
ALLPEAYIPDVNNRLSLYKRIANCETSKELDDLQVELIDRFGLLPDAAKNLIRQTQLRNN
AEQLGIRKIDIGNQGGIIEFTDDTKINPEIIIGLIQKAPSYYKLDGPNRLRLTQPLEDTQ
SRLKLVESLLDEFAEQSQAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggcatctgtattaagacccccttttcctccggcagcaaacaaagaccttacc
tggcaggagttgcatggcagctcgccggcaatggcaatagccagactaattgacgccacg
ccagggcgagtattaattgttaccgcagatgctaaccaggcacaccggttagaacaagaa
gtgaaatactttgctggtgaacacaccgaataccatgacgatataacgctttttcccgac
tgggaaactttgccctacgacagcttttcaccgcaccaggacattatttctgaccgactc
agcgtgctggcacgccttcccgatgccaaacgtggggcactgattgtcagcattaatacc
ctgctgcacagaattgctccaacctcgtttgtgcaggggcaagcgttacaaattgaaaaa
ggccagcagctcgacagcctgaagctgcgccagcaacttgagaatgccggttaccgtcat
gttaatcaggtaatggaacatggcgagttcagcgcccgtggttcaatcttagacttatac
cctatgggcagtcagacaccctaccggctcgacttttttgacgacgaagtcgataccatt
cggccgtttgaccctgagactcagctatcaaaagctccaatagacggcattaacttactg
cccgcacacgagtttccactgacaaaaacggcgattgaacgctttcgcgcaaattatcgt
gagcactttgaggcgagcactgagcgcgagtcggtgtatcagcaagtcagtaaaggccag
ttacctggtggtatagagtactatctgccgttattttttgaagaaactgccagcttgttt
gattaccttccggacgacacggtactggttactttcggcaacattcaggcaagcctggaa
cgattgtggcaggatattaatcaccgctacgatcagcgtcagtttgaccccttacggccg
ttactgcaccccaatgagctgtttcttccggtcgataatattcacgccggtttcaaacaa
taccgccgggtgcgcgctaatgtaccggcagaaatggcccaacccggtccgacgccgttt
ttgacagaggcagtaacagaaatagcagctgaccatcagcaaaaacagccctttgccaag
ttaaaggcgaaactggaacaggctttggcaaagaatgaaaaagttctgctgtcagccgaa
agcgcaggccgccgcgaagccttgcgggaaattgtcagcaaacttggctttcaggtgaga
ctttgctctgggctggatgagtgcccaactcaacaaattggactaatcattagcccaatt
attaattcattttatttaccagacgccaagctttggtttattaccgaaaccgaattgttt
ggaaaccgcgtagtacaaagccgccgacgtcagcaaaaagcgactgtcagcgctgataca
ctgattcgcaatttagcagaactgcaagccggtcagcccgttgttcacctggatcacggt
gttggtcgttatcagggactgacgacattggatgccggaaatgtcaccaccgaatttgtc
accattgaatactcaggcggggcaaagctctacgttccggtcgccaacctgaacgtttta
agtcgctacagtgggggggaagaaagccatgctccattgaataaactgggtaacgacagc
tgggacaaggccaaaaaacgagctgcagaaaaagttcgtgatgttgcggctgaactgctc
gatatttacgcccgccgcgaagcgaagcccgggtatgaatttagtattaacaaagaagat
taccagcgttttgccgccggatttccgtttgaagaaaccattgatcagcagactgcaatt
gatgcggttaagcaagacatgcaacagccccgcgctatggacaggctagtctgcggcgac
gtgggctttggtaaaaccgaagtggctatgcgcgcagcctttatcgcggttaatgaaggc
aagcaagttatggtcttagttccgaccactctgctggctcagcaacactacgaaaacttc
agtgaccgttttgctgaacaggccattcgggttgaagtgctgtcacgctttaaaaccgcg
aaacaatcaaaaggcattcttgaagacttatccaacggcaaagtcgacattgttatcggt
acccacaagttgctgcaagacaatgtgaagtgtcatgatttaggcctgctcattgttgac
gaagaacaccgctttggcgtacggcaaaaagacaccataaaacgcctgcgcgctgacgta
gatattttgacgctaacagcaaccccgattccgcgaaccttgaatatggccatgaataac
attcgtgacctgtcaattatcgccacgccacctgcaaaacgactggcagtgaaaaccttt
gtccgcgaatacgacgagcctacggttcgtgaggccatattgcgggagattctgcgcggt
ggtcaggtttatttcttacacaataatgtcgacaccattgagaaaacggcagctgagatt
gaagctctggttccggaagctcgtgttgtggttgctcacgggcaaatgcgtgaacgtgat
cttgaacgcattatgtcggacttttaccatcagcgctttaatgtactggtctgtaccact
attattgaaaccggtatcgacatacccagcgccaacaccattattatggatcgcgccgat
cacctggggttggcgcaaatgcaccagctgcgaggccgggttggacgttcgcatcaccag
gcttatgcctatttattaacgccgcaccccaaacgcatgaccaaagacgcacacaaacga
cttgaagctatctctcagctggaagacctgggtgccggctttatgcttgcaactcacgat
ctggaaattcgtggtgctggcgagctgctgggcgacgatcagagtggtcagattgaaagc
attggctttactttgtacatggacatgttagagcaagcggttaaagccttaaaggaaggc
aaagagccagcgcttgcgcagctattgcacgagcgtgctgaaattgacttaaaactgccc
gcacttttacctgaagcttacataccagacgtcaataatcgtttaagtttgtataaacga
atagccaattgcgaaaccagtaaagagcttgatgatctgcaagtcgaattgattgatcgt
tttggcttgttaccggacgccgcgaaaaacctgattcgacagacacaacttcgcaataat
gctgaacagttaggcatacgtaaaattgatattggtaatcagggcggtattattgagttt
accgacgacacaaaaattaaccccgagataattattgggttaattcaaaaagcgcccagc
tattataagctggacgggccaaaccgtttacgcttgactcaaccactggaagatactcaa
agccgcttaaaactggtagagtctctgttagatgagtttgcagagcaatctcaggcggcg
taa
DBGET
integrated database retrieval system
