Idiomarina sp. PL1-037: U0358_13005
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Entry
U0358_13005 CDS
T10248
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
idp Idiomarina sp. PL1-037
Pathway
idp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U0358_13005 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idp03400
]
U0358_13005 (recB)
Enzymes [BR:
idp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U0358_13005 (recB)
DNA repair and recombination proteins [BR:
idp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U0358_13005 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_12
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WQC52939
LinkDB
All DBs
Position
complement(2765091..2768792)
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AA seq
1233 aa
AA seq
DB search
MSHLPSHTLENPLDFPLNSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETGFERE
LVPKNILVMTFTKAATEELSDRIRARLAEAAAYFRDPEAVEGDPFLASLREDCAAQGQNL
MHLARLLDLASQSMDEAAVKTIHGWCQSMLKEHAFASGSLFSQDVETDNEELRLQAAEDY
FRRFIYPADAELSARLLEDFKSPEALLGLTYSLSKSGQAPVDGDLHSLLKEAESAHQQRM
AAIKQEVAPIVQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAANWKNISTDE
LQKFADAKLGGMPQSWAVLGELQDRIKRSKVQQQEELAKVKQHAAFWVSSRFAELQNQRA
EMGHDDMLTRLRDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNLAEPH
PGTGIFLIGDPKQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDSVNSLFER
DEELPLGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSVSGEEKRNK
DTFFRAAANHHANLIASLLNDPQAGYYNEDDKLEQRVKTSDIAVLVNNFNEANAIKKALS
DRGLKSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQLLGLPLSELEHIH
SHEREWEERVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLEDRIHGERQLSDVLHIA
ELLQQQSLVLDGIPALVNHFAEQVNERHGFGSNSRTQSDEQQLRLESDDELIKIITIHKS
KGLQYPLVFMPFVAYTQAEAYRIKPPAVYHDENGELQVLWSKDDDNKQRLSNEILAEDLR
KMYVAVTRAQYATFIALEAVKEHRNNPLFYLLNGGESLTDELYNEVSERWQKAPHTQLTR
LEDDEPLVRALEQEQTAPKLTPRSMPSDRKLERWWVASYSALKYEGAVTKSVQAPQSPDE
MNLLDERDDDDAEVASATEPSPDSIHHLPKGAGPGTFLHNLLEESANMGFAQIAGDAAER
TELVEGFCVSPYWQEHQNSLEHWLDAYLHNQFPINDSGDRISLSALDQYKAEPEFWFGAS
EVNAQRLDALVREHTLPGHERPALEPNVLNGMLKGFIDLVFEHNGKYYVADYKSNWLGED
DHAYTEQAMREKILHSRYDLQYVIYTLALHRLLKARLGSDYDYDTHVGGAVYLFLRGHRA
ETGGAFCDRPPRELIEQLDALFAGRDFSDKESV
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatttgccttctcatacgttagagaacccgctcgactttccgttgaacagcagc
cgactcattgaggccagtgcgggtaccggtaaaacctacaccattgctgcgctttatgtg
cgtttggtgattggccatggctcgcataatggtgcggaagaaaccgggtttgagcgcgaa
ctggtgccgaaaaacattctggtcatgacctttaccaaagccgccactgaagagctgagc
gatcgtattcgcgcgcggttggcggaagccgccgcctacttccgtgacccggaagccgta
gaaggcgaccccttcttagccagtctgcgcgaagactgcgcggcacaggggcaaaacctg
atgcatctggcgcgactgttagatttagcctcgcagtccatggacgaagcggcggtgaaa
accatccacggttggtgccagtcgatgctgaaagaacacgcttttgccagcggcagtttg
ttcagtcaggacgttgaaaccgacaacgaagagctgcgcctgcaggccgctgaagattac
ttccgacgttttatttacccggcggatgccgagcttagtgcccgattgctggaagatttt
aaatcacccgaagccttgttagggctcacttatagcttaagcaaaagcgggcaggcgcca
gtcgacggtgacttgcacagcctgctgaaagaagctgaaagtgcgcatcagcaacgaatg
gctgctataaagcaggaagttgcacctattgtccaggaactggttgataaaacctcgcaa
gctaagggtgcagcaaccaaacttaagcagtttcagaaatttgcggactggtgcggcgat
cctgacctagttgagcccgaagctactgcagctaactggaaaaacataagcaccgatgag
ttacaaaagtttgccgatgccaaacttggcggtatgccccaaagctgggcggtgttaggt
gagctgcaggatcgcattaagcgcagcaaggtgcagcagcaggaagagctggccaaagta
aaacaacacgccgctttctgggtcagcagccgctttgccgagttgcaaaaccagcgggcc
gaaatgggtcacgatgacatgctcacccgtttacgtgacgcgctgaaaggccccagtggt
gaggccttagcagccgctattcgtaagcagtatccggtagccatggtggacgagtttcag
gacaccgacccggttcagtacgagatttttaaccgcatttataatttagcggagccgcat
ccgggcaccggtattttccttattggtgacccgaaacaggccatttacagcttccgcaac
gccgatatatacacctatttaaaagcccggcgtgataccgaaggccggcattataatctg
gcgcgaaacttccgttcatcgcaggcgatggtggacagcgttaattccctgtttgagcgc
gacgaagagctgccgctcggtgcttttctgtttaaaaccgaagcagaaaatcagctgccc
tttaatccggtgggtgcaaatgggctgaagcgcactttcaaacattgcctgttatccagc
aatttaaaaaccgcaccggcgcttctgtggtcggtgtccggtgaagaaaaacgcaataaa
gacacgtttttccgcgctgccgcgaaccatcacgctaacttgattgcctccctgcttaat
gatccgcaggccgggtattacaatgaagacgataaactcgaacaacgcgtaaaaaccagt
gacattgcggtgctggtgaacaactttaacgaagccaacgccattaaaaaggcgctgagc
gaccgcggactgaaaagcgtttacttgtcagacagggagtcggtatttgcgcagcgcgtt
gccaaagacctgctggcgctggtgagtgcctgcgccgaaccgcgagacccgtcgctgata
cgcagtgctttagccacgcagttgcttggcctgccgctgagtgagctggaacatattcac
agccacgaacgcgagtgggaagagcgggtagagcagtttttaagttatcacgaccagtgg
cagcgacagggtgtgctggccatgttgcacagcctgctgcacgaccatcaggtgccggcc
aagctgctggaagatcgtattcacggcgaacgccagctttccgacgtgctgcatattgcc
gagctgctgcaacagcagagtctggtactggatggcattccggcactggtgaaccatttt
gccgagcaagtgaacgaacgacatggctttggcagtaacagccgcactcagagtgacgag
cagcaactgcgcttagaaagcgacgacgaactgataaaaattatcaccattcacaagtca
aaaggcctgcagtacccgttggtgttcatgccctttgtggcgtacacccaggcagaagcc
taccggataaaaccgccggcggtgtaccacgatgaaaacggcgagctacaagtattgtgg
tcaaaagatgacgacaacaaacagcgtttgagtaatgagatcctcgccgaagacttacgc
aaaatgtacgtggccgttacccgcgcgcaatacgcgacctttattgcgctggaagcggtt
aaagagcatcgcaacaacccgctgttttatctgctgaatggcggcgagtcactaaccgat
gagttgtacaacgaagtcagcgaacgctggcaaaaggcaccgcacacgcaattaacgcga
ctggaagacgatgagcctttggtccgagcgctggaacaggagcaaacagcgccgaagctg
acaccgcgcagcatgccctcagaccgcaagctggagcgctggtgggtggccagttacagt
gcgctgaagtacgaaggtgcagtgacaaaaagtgtgcaggcaccgcagtcgcccgacgaa
atgaacctgctagatgaacgcgacgatgatgacgcggaagttgccagtgccaccgagccg
agtccggacagcattcatcacttacccaaaggcgcggggccgggtacgtttttgcataac
ctactggaagagtcagccaatatgggttttgcgcaaatagccggtgacgctgccgagcgt
accgagctggtagagggtttttgtgtcagcccttattggcaggaacatcaaaacagcctg
gagcattggctggacgcctatttgcataaccaattccccattaacgacagtggtgaccgc
atcagcttaagcgctctggaccaatacaaagccgagccggaattctggttcggtgccagc
gaggttaacgctcagaggctggatgctctggttcgcgaacacactttgccggggcatgaa
cgcccggcactggaacctaatgtgctgaacggcatgctcaaaggctttatcgatttggtg
tttgagcataacggtaaatactacgtggcggattataaatccaactggctgggcgaagac
gaccacgcctacaccgagcaagccatgcgcgagaaaattttgcacagccgttatgacctg
caatacgtcatttacacgctggcactgcatcgtttgttaaaagcgcgcttgggcagcgac
tacgactatgacacccatgtaggcggtgccgtgtatctgttcttgcggggccaccgggcg
gaaactggtggtgcgttctgcgaccggccgccaagggaactgatagagcagttggacgcg
ctatttgcgggtagggacttttcagataaggagtcggtatga
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