Idiomarina sp. OT37-5b: C5610_01285
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Entry
C5610_01285 CDS
T05379
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5610_01285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idt03021
]
C5610_01285 (rpoC)
03400 DNA repair and recombination proteins [BR:
idt03400
]
C5610_01285 (rpoC)
Enzymes [BR:
idt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5610_01285 (rpoC)
Transcription machinery [BR:
idt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C5610_01285 (rpoC)
DNA repair and recombination proteins [BR:
idt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C5610_01285 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
DUF2267
Apocytochr_F_C
LPD39
MCM_C
Motif
Other DBs
NCBI-ProteinID:
AVJ55047
LinkDB
All DBs
Position
261608..265840
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLKFLKPANQTEEFDGIRIQLSSPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEGGLTSLEQGQILTEEEYLDALEEHGDEFDAKM
GAEAVLDLLRAIDIDAEIQQLREELPETNSETKRKKISKRLKLLESFQMSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKMVERETAEVWDVLDEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTKEKINAKGEGMAFKSPSEAEKAYRNG
LVELHSRVKVRITDTTIHEDGTKETKTQLRDTTVGRALLSLIMPKGLPFELIDQPMGKKP
IARMLNQAYRDLGLKDTVIFADQVMYTGFHYAMVSGASVGINDMVIPDAKKEIVEAAEEE
VAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDNLSKEIVINKDGKEEEQASFN
SIFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVIMEEDCGTFEGLIMKPLIEGGDVVEPLRERVL
GRVVCEDVLKPGSDEVLLPRNTLLDEKNCDILEENSIDEVKVRSVITCDTDFGVCAHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENSVQVKNPGTIKL
HNAKWVVNSDKAHVITSRSTELTLIDEYGRERERYKVPYGAVLKKGEGDAVEGGETVANW
DPHTHPIITEVEGRIKFVDLIDGVTMTRQTDELTGLSSVVVLETGQRTSAGKDMRPMVKL
VDEKGNDVNIVGTDIPAQYFLPGNAIINLEDNAEVKVGDTLARIPQEGSKTRDITGGLPR
VADLFEARRPKEPAILAEITGTVSFGKETKGKRRLLITPTDGGDQYEEMIPKWRQLNVFE
GEHVEKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKINDKHIETIVRQM
LRKALILRANDTNLLEGEMVEMSEVLAANAKAEAEGKQPATFERQLLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKKDSLRGLKENVIVGRLIPAGTGYSYHKERMQRRLDEMQVV
EEAPKMTAEEAEQQLADALNAGGQSDDSAE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttgcttaagtttttaaaaccggctaaccagacagaagagttcgatggtatt
cgaatccaactgtcatcacctgatatgatccgcagttggtcatacggtgaggtgaaaaag
ccggaaacaatcaattaccgtactttcaagccagaacgtgacggcttgttctgtgcgcgt
atttttggtccggtaaaagactacgaatgtttgtgtggtaaatacaagcgtttgaagcac
cgtggcgttatctgtgagaagtgtggcgttgaagttacactgaccaaggtacgtcgtgag
cgtatgggtcacatcgaactggccagcccggttgcacatatttggttccttaagtcactg
ccgtctcgtatcggtttgatgctggacatgacgctgcgtgacatcgaacgcgtgctgtac
ttcgaatcttatgtggtaaccgaaggtggcttgacgtcactggaacaaggccagattctg
accgaagaagaataccttgatgcgttggaagagcacggcgacgagttcgacgcgaagatg
ggtgcggaagccgtacttgatctgttacgcgccatcgacatcgatgctgagatccaacag
ctgcgtgaagagttgccggaaaccaattccgaaaccaagcgtaagaaaatcagcaagcgt
ctgaaattacttgagtcgttccaaatgtcaggtaacaagcctgagtggatgattctgaaa
gtattaccggtgttaccaccggatttgcgcccattagtaccgttggacggcggtcgtttc
gcgacttcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaag
cgtctgcttgacttagcagcacctgacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagccgttgatgcgttgttagataatggtcgtcgtggccgtgctatcactggctcgaac
aagcgcccactgaaatcacttgccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactcaggtcgttcggttattaccgttggtcctaag
ttgcgcctgcatcagtgtggtctgcctaagaagatggcattggaactgttcaagccattt
atttacggcaaacttgagcgccgtggcttggcaacaaccatcaaagccgcgaagaagatg
gttgagcgtgaaaccgcagaggtttgggacgttcttgatgaagtcatcaaagagcatccg
gtgctgttgaaccgtgccccaacacttcaccgtttgggtattcaggcattcgaaccggta
ctgatcgaaggtaaggcaattcagttgcacccattggtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggccgttcacttaccgttgacgctagaagcgcagctagaagcg
cgtgcgttgatgatgtcgaccaacaacgtactgtcgccagccagtggtgatccgatcatc
gttccttcacaggacgttgtcttaggtctgtactacatgaccaaagaaaagatcaatgcc
aaaggcgaaggcatggcgtttaagagcccgtcggaagctgaaaaagcctaccgtaacggc
ttggttgaactgcactctcgcgtgaaggtacgtatcacggataccaccattcacgaagac
ggcaccaaagaaaccaaaacgcaattgcgtgatacgaccgtcggtcgtgcattgttgtca
ctgatcatgccgaaaggcttaccgtttgagctgatcgatcagccaatgggtaaaaagcca
attgctcgtatgctaaaccaggcataccgtgatttaggtctgaaagacaccgttattttt
gctgaccaggttatgtacacaggtttccattacgcaatggtctccggtgcatcggttggt
atcaacgatatggttatcccggatgccaaaaaagaaatcgttgaagctgcggaagaagaa
gtggcagagattcaggagcagtttgaatcaggtctggtaaccgcgggcgagaaatacaac
aaagttatcgacatttggtcaaccgctaacgagaaagtctcgaaagcgatgatggacaac
ctgtcgaaagaaattgttatcaacaaagacggtaaagaagaagagcaggcatcatttaac
tctatctttatgatggcggactcgggcgctcgtggtagccccgcacagattcgtcagttg
gccggtatgcgtggtctgatggcgaagccggatggctcaatcatcgaaacgccaatcgtt
gctaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggccgatactgcattgaagaccgcgaactcaggttatctgacccgtcgtctg
gttgacgtttcacaagacgttgtgatcatggaagaagattgtggcacgttcgaaggcctg
atcatgaagccattgatcgaaggtggtgacgttgttgaaccattgcgcgaacgtgtactg
ggtcgtgtggtctgtgaagacgtcctcaagcctggttctgatgaagtgctgctgccacgc
aacaccttgttggacgagaagaactgcgacatcctcgaagagaactccatcgatgaagtt
aaagttcgctcggtcatcacctgtgacacggactttggtgtttgtgctcactgttacggc
cgtgacttggctcgtggccacatggttaaccaaggtgaggcagttggtgttatcgcggct
cagtccatcggtgaaccgggtacacagcttaccatgcgtaccttccacattggtggtgcg
gcatcacgggcgacagcagaaaacagtgtccaggttaaaaacccgggtaccatcaagcta
cacaacgcgaaatgggttgttaacagcgataaagcgcacgtgattacctcacgctcgacc
gagttgacgctgattgatgagtatggtcgtgaacgtgagcgctataaagtgccttacggt
gcggtactgaagaaaggtgaaggcgacgcagttgaaggcggtgaaaccgttgcaaactgg
gatccgcacacgcacccaatcattaccgaggtagaaggtcgcatcaagtttgttgacttg
attgatggtgtcaccatgactcgtcagaccgacgaactgaccggtctttcaagcgttgtt
gtactggaaacaggtcaacgtaccagcgccggtaaagacatgcgtccgatggtgaaactg
gtggatgagaaaggtaacgacgtaaacatcgttggtaccgatatcccagcgcagtacttc
ctgccgggtaacgcgatcatcaacctggaagacaacgccgaagtgaaagtgggtgatacc
cttgcacgtattccgcaagaaggttcgaaaactcgcgacatcaccggtggtctgccacgg
gttgctgacttgttcgaagcgcgccgtccgaaagagcctgcgattcttgctgaaatcacc
ggtacggtgtcattcggtaaagaaactaaaggtaaacgtcgtctattgatcacaccaacc
gatggcggtgatcagtacgaagagatgattccgaagtggcgtcagctgaacgtgtttgaa
ggtgaacacgttgagaaaggtgaagttatcgcggacggcccggaagcgccgcacgatatc
cttcgcttgcgtggtgttagcgcggtagcaaactacatcgttaacgaagtgcaggaagtt
taccgcttacaaggtgttaagattaacgataagcacatcgaaactatcgttcgtcagatg
ctgcgtaaagcacttatcctgcgcgctaacgacactaacttgctggaaggcgaaatggtt
gaaatgtctgaggtactggcagcaaacgcaaaagccgaagcagaaggcaaacagcctgcg
accttcgagcgtcagctgttgggtattaccaaagcatcactgtcaactgagtcgtttatt
tctgcggcctcgttccaggagacgactcgtgtcctgaccgaagcggccgttggcggcaag
aaagacagtctgcgcggactgaaagaaaacgttatcgtaggtcgactgattcctgccggt
accggctattcgtatcacaaggaacgcatgcagcgtcgccttgacgaaatgcaggtggta
gaagaagcgcctaagatgacggctgaagaagcagaacagcaactggctgacgccctaaat
gcgggtggccagagcgatgatagtgcagaataa
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integrated database retrieval system
