Idiomarina sp. OT37-5b: C5610_04055
Help
Entry
C5610_04055 CDS
T05379
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5610_04055 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_04055 (pnp)
03016 Transfer RNA biogenesis [BR:
idt03016
]
C5610_04055 (pnp)
Enzymes [BR:
idt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C5610_04055 (pnp)
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C5610_04055 (pnp)
Transfer RNA biogenesis [BR:
idt03016
]
Prokaryotic type
tRNA degradation factors
C5610_04055 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
S1_2
S1_RRP5
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AVJ55549
LinkDB
All DBs
Position
906959..909103
Genome browser
AA seq
714 aa
AA seq
DB search
MNPITKQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVTVVAKKEAKEGQNFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVN
PQINPDIVALIGTSAALAISGVPFDGPIGAARVGVIDNEYVLNPTMDELEKSKLDLVVAG
TEQAVLMVESEAQLLSEDQMLGAVVYGHEQMQTVVSAINEFAAEAGKEKWDWQAPAKDEA
LQAKIRELAEQGIGEAYRITDKAERKGKLDEVKQAMTEQLLADDENVDLEAAGEIFHDLE
SEIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTERD
AQMIDELTGTNTSRFMLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEEF
PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSDI
LGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITREIMESALAQAKAARLHILKVMDEAI
GSHREELSSYAPRFSTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKIAASD
QADADAAIERIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVND
VNEYLKVGDVVPVKVLEIDRQGRVRLSMKEAVEKKEEAPAEAEATASNGDNNDE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccgataactaaacaatttcaatacggtcagcacacagtcactctagaaaccggc
gtggttgcacgtcaagcgactgctgccgtaatggcaagcatggatgacaccactgtgttg
gtgaccgtagtggcgaagaaagaagccaaagaaggccagaacttcttcccgctcaccgta
aattatcaggaaaaaacttacgccgccggtaaaatcccgggtggctttttcaaacgtgaa
gggcgtccaagtgaaaacgagaccctgacatcacgtcttatcgaccgcccaatccgtccg
ctgttccctgaaggcttcatgaacgaagtacaggttgtcgctactgtggtttctgtgaac
ccacagattaatccggacatcgttgcgctgatcggtacctccgcggcattagctatttct
ggtgtgccgtttgacggtcctatcggtgcggctcgcgttggcgttattgataacgaatac
gtcttaaacccaaccatggacgagctggaaaaatccaagctggatctcgtggttgccggt
accgaacaagccgtactgatggttgagtcagaagctcagttgctgtctgaagaccaaatg
ttgggtgcggttgtttacggtcacgaacaaatgcaaaccgttgtttctgccattaacgaa
tttgccgctgaagccggtaaagaaaaatgggattggcaggcacctgcaaaagacgaagcg
ttgcaggctaaaatccgtgaattggccgagcagggcattggcgaagcttatcgcatcacc
gacaaagccgagcgtaaaggtaagcttgacgaagttaagcaggcgatgaccgagcagttg
ctggcagatgacgagaacgttgatcttgaagcggccggtgaaatcttccacgacctcgag
agtgaaatcgttcgtagccgtattattgccggcgaaaaacgtatcgacggccgtgacccg
gacatggttcgtgccatcagcgttgccactggcgtgctacctcgcacccacggttcggcc
ttgtttacccgtggtgaaactcaggcattggttaccgcgactctgggtacagaacgtgac
gcacagatgatcgatgagctgacgggtaccaataccagccgctttatgttgcattacaac
ttccctccatactgtgtgggtgagaccggcatggtcggcgcgccgaagcgtcgtgagatt
ggtcatggccgcttggcgaaacgtggtattcaggccgttatgccaagccacgaagaattc
ccatacaccatccgtgtggtatcagaaatcaccgaatcgaatggttccagctcgatggcg
tctgtctgtggttcatcactggcgttaatggatgccggcgtgccgattaaatcttcggtt
gcaggtattgccatgggtctggtgaaagaaggcgacaagcacgtggtactgtctgacatc
ttaggtgatgaagatcacttgggtgacatggactttaaggttgccggtaacaccgatggt
attacggccttgcagatggacatcaagattgacggcatcacccgtgaaatcatggaaagc
gctttggctcaggcaaaagccgctcgcttgcacatccttaaagtaatggatgaagcgatt
ggtagccatcgcgaagaactgtccagctacgcaccgcgtttcagcaccatcaagattgat
caggacaagatcaaagacgtgatcggtaaaggcggcgcggtaatccgtgaattgacggaa
tccaccaacaccaacatcgagatcggtgacgacggtaccattaaaattgccgccagtgat
caggccgatgccgatgccgcgattgagcgcattaagcaactgactgccaacgttgaagtg
ggcaaaatttaccagggtaaagtggctcgtatcgttgatttcggtgcgtttgttacggta
ttaccaggtaaagatggcttggttcacatctcgcaaatcgccgaagagcgtgttaacgac
gttaacgaatacttgaaagtcggtgatgtcgtgccggttaaagtattggaaattgaccgt
caaggacgtgttcgtctgagcatgaaagaagcggttgagaagaaagaagaagcgcctgca
gaagcggaagcgaccgcatcgaatggcgacaacaacgacgaataa
DBGET
integrated database retrieval system
