Idiomarina sp. OT37-5b: C5610_05970
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Entry
C5610_05970 CDS
T05379
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5610_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_05970
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5610_05970
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5610_05970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVJ55900
LinkDB
All DBs
Position
complement(1277822..1279048)
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AA seq
408 aa
AA seq
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MTFSDLGLCPEILTALTRQGYTEPTPIQAQAIPPVLAGNDVMAAAQTGTGKTAGFTLPIL
EMLKDNERAKANTARVLILTPTRELAAQVGESVATYGAGLPLNYAVVFGGVKINPQMMKL
RKGVDILVATPGRLLDLYQQNAIRFPKLEVLVLDEADRMLDMGFIHDIKKIIKLLPTKRQ
TLMFSATFSDDIRALAKSLVNNPVEVSVAPPNSTAERIEQTMYAAEKSEKPRMLMQILRD
LNLPQVIVFSRTKHGANRLVKQLDSGGFLAAAIHGNKSQGARTKALSDFKAGKIQVLVAT
DIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFKTLKAIEK
LIGQPIERCKLEGFSNVELTGKTPPPKKTQRPPRKPRNASNKSPRGNR
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgactttttctgatctcggactttgccctgaaattcttaccgcccttacacgccagggg
tacacagaaccaacgccgatccaggcacaagcgattcctccggtacttgccggtaacgac
gtaatggccgcggcacaaacagggaccggtaaaaccgccggttttaccttaccgattttg
gaaatgttaaaggacaacgaacgcgctaaagccaataccgcgcgtgtgctgatccttacc
cccacccgcgagctagcagcgcaggtgggtgaaagtgttgcaacctatggcgccggactg
ccgctaaattatgccgttgtctttggtggggtaaaaatcaacccacaaatgatgaaactg
cgtaaaggcgttgatattttggtcgcaaccccgggccgcctgctcgatctttaccagcaa
aacgccattcgctttccaaagttggaagtgttggtactggacgaagccgaccgcatgttg
gacatgggcttcattcatgacattaaaaaaatcatcaaactgttaccaacaaagcgccag
acgttaatgttttcggcgaccttttctgacgacatccgtgcgttggccaaaagcctggtc
aataacccggtcgaagtttctgtggcgccgccaaattccaccgccgagcggattgagcag
accatgtacgccgcagaaaagagcgaaaagcctcgcatgctgatgcaaatactgcgtgac
cttaacttgcctcaggtgattgttttttcacgcaccaaacacggtgccaaccgtctggtg
aaacaactcgacagcggcggctttctggcggcagccattcacggtaacaaaagtcagggc
gcacgcaccaaagcactgagcgactttaaggccggcaaaatacaggtgctggttgctacc
gatattgccgctcgcggcctggatatcgaaaaactgccctatgtgatcaattatgatctg
ccgcaagttgccgaagattacgtccaccgtattggccggaccggccgcgccggtcaggta
ggtcacgccatttctttggtcatggacgaagaatttaagactctcaaagcgatcgaaaaa
ctcatcggccagcccatcgaacgttgcaaactggaaggttttagcaacgtcgaacttacc
ggtaaaacgccacccccaaagaaaacgcagcgtccaccgcgtaaaccgcgcaacgctagc
aataagtcaccacgcggcaatcggtaa
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