Idiomarina sp. OT37-5b: C5610_06575
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Entry
C5610_06575 CDS
T05379
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
idt
Idiomarina sp. OT37-5b
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_06575 (hrpA)
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C5610_06575 (hrpA)
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C5610_06575 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
nSTAND3
DUF5344
ResIII
ABC_tran
AAA_11
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
FtsK_SpoIIIE
NAT10_TcmA_helicase
AMG1_III
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVJ56002
LinkDB
All DBs
Position
complement(1411225..1415118)
Genome browser
AA seq
1297 aa
AA seq
DB search
MDPKALIKQYQTELEQCTLQQAAQLRGRLRGLHKVKKPERQQQILDKIKADIEAAQLAYL
ARSEQRFHIEYPDQLPVAQQRDDIKKAIREHQVVVVAGETGSGKTTQLPKMLLELGYGRR
GVIGHTQPRRLAARSVAARIGEELKDTQNQQVGYKIRFQDKTAETTAIKLMTDGMLLSEL
QNDPLLLQYDAIVIDEAHERSLNIDFLLGVLHQLLPKRRDLKVIITSATIETERFSKHFN
DAPVLTVSGRTYPVEVRYRPPTDGKSSETDVLQGLLDAVQELQAEGPGDILIFASGEREI
RDYADAINDLQLRDTEVLPLYARLSSHEQNRVFHPHGGRRIVIATNVAETSLTVPGIRYV
IDPGTVRISRYSYRTKVQRLPIEPISQASANQRKGRCGRIGPGICIRLYSEEDFMSRPEY
TDPEILRTNLAAVILQMSALRLGDIREFPFVQKPDERFVKDGLNLLEEIHAIDAGRKQQQ
PRLTEIGRQLSRLPLDPRLARMVLAGQQHGCVREMLIITAALSIQDPRERPHEAKQKADE
WHQRFADKSSDFNAYLNLWNYVQEKQKALSGNQFRKQISREFLHFMRIREWQDIYTQSRQ
SVREMGLRINDEAATFEQVHRAILSGLVSQVGLKDQKHEYQGTRQTRFHIFPGSHLFGKP
PKWVVSAELVETSRLFGRVNAAVEPEWIEDAAQHLVKRQYLEPHFEAKQGSVVADEQVTL
LGLILVGRRRVQYGPVAPVKARELFIREALVQGQIKRQLPFIKHNIKLIESVQELEAKSR
RRDILVDEEELFDAYDRHIPAGIFTEKLLAGWWHKASKKDPKLLFFEREDLIGADTSHIT
EQEYPEFWRQGNLRLPLTYHFEPTAEDDGVSVNIQLAILNQVSEEGFDWHIPALREERIA
ALIKSLPKPIRRNFVPAPNYASAVMADIEPMQGSLLEAMTDKLRRMSGVTVDPDAWNEEA
VPAHLRINFKILDGKKTVQQGRDLSVLKQQLSGRVQQRLDKSAGDEVKRSEVEDWDFDVL
PQVVTEKQHGFEIKAYPALTADNGKLSVQMYDNADEAEAKHLRGVRELVLKQVPSPVKHL
QKSLSNKAKLAMYFNPWGKVDSLIQDCIAAAVDEIIAEHRQQGNSIRDEQAFQALKEQVR
GELNERVEVIAGLVERCLLLSQQLRKQLKGKIPLDQIQSRGDVQKQLDELIFKGFVSQLG
AARLADVERYLKALQKRLEKLPVDPNKDRLHTLTLDKLEQDYKKLLKKYTKVVPQQVAEI
YWMLQELRVSLFAQTLGTKYPVSEKRVRSAMDEVTRA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggatcctaaagcgctgattaagcagtatcagaccgaactggaacaatgcacacttcaa
caggccgcgcaactgcgcggccgtttacgtggactgcacaaagtcaaaaagccagaacgt
caacaacagatcctggacaaaatcaaagcggatatcgaagcggctcaactggcttatctg
gcccgcagcgagcaacgttttcatattgagtacccggaccaattaccggtcgcacagcaa
cgggacgacatcaaaaaagccattcgcgagcatcaggtcgtggtggttgcgggtgaaaca
ggttcgggcaaaaccacacagctgccaaaaatgttgctggagttggggtacggccggcgt
ggtgtgattgggcacacgcaaccgcgcaggctagccgcgcgcagcgtcgccgcgcgtatc
ggtgaagagttgaaggatacgcaaaatcagcaggtcggttataaaatccggtttcaggat
aaaaccgcagaaaccacggcaataaagctgatgaccgatggtatgctgttgtcagagtta
caaaatgatccgttactgctgcagtacgacgccatcgtgattgacgaggcccatgaacgt
agtcttaatatcgactttttgttgggggtactgcatcagttactgcccaaacgccgggat
cttaaggtcatcattacctcggcgaccatcgaaactgaacgtttttccaaacactttaat
gatgcgccggtgcttaccgttagtggccgaacctatcccgttgaagtacgttaccggccg
ccgactgatggcaaaagctcggaaaccgatgttttgcaggggctgttggacgcggtacag
gaattacaggcagaagggccgggtgatatcctgatttttgccagcggtgaacgtgaaata
cgtgattacgccgatgccataaacgatttgcagctgcgcgacactgaggtgttgccgttg
tacgcacgactgtcgtcgcacgaacaaaaccgcgtgtttcatccccacggcggccgtcgt
attgtgatcgccaccaatgttgctgaaacctcgctgacggttccgggcattcgttatgtg
attgatccgggtacggtgcgcatcagccgttattcctaccgtaccaaggtgcaacggctg
ccgattgaaccgatatcgcaggccagcgccaaccaacgtaaaggtcgctgtggccgaatt
gggccgggcatttgcattcgtctgtacagtgaagaagattttatgagccggccggaatat
accgacccggaaatcttacgcacgaatctggccgccgtcattctgcagatgtccgcactg
cggctgggcgatattcgcgaatttccgtttgtacaaaagcccgacgaacgttttgtcaaa
gacggtctaaacttattggaagaaattcatgccattgacgccgggcgtaaacagcaacag
ccacgtctgaccgagattggtcgacagctttcgcgactgccgctcgacccgcgtttagca
cgcatggtgctggcagggcagcagcatggttgcgtgcgcgaaatgctgatcatcaccgcc
gcactgagtattcaggatccccgcgagcgtccccatgaagcgaaacaaaaagccgatgaa
tggcatcaacgctttgccgataaaagctctgattttaatgcgtacctgaacctctggaac
tatgtgcaggaaaagcagaaagcgctgagcggcaatcaattccgaaagcaaattagccgc
gaatttttgcattttatgcgcattcgtgaatggcaggacatttacacccagagtcgtcaa
agcgttcgcgagatgggactgcgcattaatgatgaagcggcaacattcgaacaagtgcat
cgcgcgatcctgagcggactggtatcgcaggttggcttgaaagatcaaaaacacgaatat
cagggtactcggcaaacgcgctttcatatcttccccggctctcatttatttggcaaaccg
cctaagtgggtcgtcagtgccgagttggttgaaacctcacgcctgtttggccgggtaaat
gcggcggtggaaccggagtggatcgaagatgcggcgcaacatctggtgaaacgtcagtat
ctggagccgcacttcgaggccaaacagggatcagttgttgccgacgagcaagtcacgtta
ctcggtttgattctggtgggtcgtcgccgtgttcaatatggcccggtggcaccggttaaa
gcgcgcgagttgtttattcgcgaggcgctggtgcagggacagattaaacgtcagttaccg
tttattaagcataatattaagttaattgagagcgtgcaggagctggaagcaaaatcgcgc
cggcgcgatattttggtggatgaagaagaactgttcgacgcctacgaccgtcatattccg
gccggtatttttacggaaaaactgttggcgggctggtggcataaagccagtaaaaaagac
cccaagctgttgttctttgaacgcgaggatctgatcggtgcggatacctcgcacattacc
gaacaggagtacccggagttttggcgtcagggcaatctgcggctgccgttaacttatcac
tttgaaccgaccgcggaggacgatggtgtcagtgttaatattcagctggccattctcaat
caggtgtccgaagagggtttcgactggcacattccggcattgcgggaagaacgtattgcg
gcgttaattaagtctctgccgaagccgatacgccgcaattttgtaccggcacccaattac
gccagtgcggtgatggcggacattgagcccatgcaaggctccttattagaggcgatgacg
gataaattgcgtcgcatgagtggcgtaaccgtagaccccgatgcctggaacgaggaggcg
gtaccggctcatctgcgcatcaacttcaaaattctggatggcaaaaaaacggtgcagcag
gggcgggatttgtcggtgttaaagcaacagttgtccggacgggtgcaacagcgcctggac
aaatcagccggtgacgaggtcaagcgtagcgaagtcgaagactgggattttgatgtgtta
ccgcaggtggtcacggaaaaacaacacggatttgagattaaggcttatccggcgctgact
gctgataatggcaaactgtcggtacaaatgtatgacaacgccgacgaagccgaagctaag
cacttgcgcggcgttcgtgagttggtgttgaaacaggtgccgtcaccggtcaaacacttg
caaaaaagcctttccaataaagccaagctggcaatgtactttaacccctggggtaaggtc
gacagcctgatccaggactgtatcgcagcggctgttgatgaaatcattgctgagcaccgc
cagcagggtaactcgattcgcgatgaacaggcgtttcaggccttgaaagaacaggtgcgc
ggcgagttgaatgagcgggttgaagtaatagccggtttggttgagcgctgtctgctgctc
agtcaacaactgcgtaaacaactgaaaggcaagataccattggatcagatacagtcccgc
ggcgatgtgcaaaagcagttggatgaactcatttttaaggggtttgtcagtcaacttggg
gcggcgcggttagcggacgtggagcgttatttaaaagcactgcaaaagcgcctggagaag
ctgccggttgatccgaacaaggatcgattacacaccttgacgctggacaagcttgaacag
gattataaaaagctattgaaaaagtataccaaagtggtaccgcagcaagttgctgaaatc
tactggatgctgcaggagttacgggtatcgttgtttgcgcagacgttgggtactaagtat
ccggtgtcagagaagcgggtaaggagtgctatggatgaggtaacccgcgcctga
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integrated database retrieval system
