Idiomarina sp. OT37-5b: C5610_08365
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Entry
C5610_08365 CDS
T05379
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03030
DNA replication
idt03430
Mismatch repair
idt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C5610_08365
03430 Mismatch repair
C5610_08365
03440 Homologous recombination
C5610_08365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
idt03032
]
C5610_08365
03400 DNA repair and recombination proteins [BR:
idt03400
]
C5610_08365
Enzymes [BR:
idt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C5610_08365
DNA replication proteins [BR:
idt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C5610_08365
DNA repair and recombination proteins [BR:
idt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C5610_08365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AVJ56322
LinkDB
All DBs
Position
complement(1786836..1790315)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTGDTNFVHLRIHSDFSMIDGLTKIGPICQGVAEAGMPAMALTDQMNFCGLVQYYGAAHK
QGLKPIVGCDLWVQSDYPQGEVFRLTALALNNTGYQQLIQLVSKAYLRGHVGDKPVIDKD
WLIEHNEGVLLLSGAREGDVGRALLKGHSEALQQCLAFYQRYFPDRYYLELIRTGRPDEE
DYLHKAVAVAGEYQLPVVATNEVVFLKEENFEAHEIRVAIHDGYQLGDKRRPKKYSAQQY
LRSAEEMQALFADLPEALQNTVEIAKRCNVTIRLGEYFLPEFPTGDLSTEDFLVKVSQEG
LEERLAFLFPDPDERARRRPEYDERLQTELNVINQMGFPGYFLIVMEFIQWSKDNGIPVG
PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVA
DLYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLVPGDPGMTLAKAFQQVP
ELGERYDQDEEVKELIDFARILEGVTRNAGKHAGGVVISPTTITDFAALYCDDEGKNPVT
QFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARHQRDGKPLVDINAIPLDDPQCFKI
LKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGPLESGMVDNFIDRKHGRE
EVSYPDATYQHDCLKPILEPTYGVILYQEQVMQVAQVMAGYSLGAADLLRRAMGKKKPEE
MAKQRDIFREGAAKNNIDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYP
AEFMAAVMSADMDNTDKIVTLADECERMGLKLLPPDVNKGQYKFTVDEQGRVVYGIGAIK
GVGEGPIEAIIEAREQGGAFTDLFDFCCRVDLKRLNKRVMERLIRGGAMDNLGPHRATLM
ASLEKAMRQAEQHHKAESIGQSDMFGVLTTEPEAVEHEFVNVKPWPEAVWLEGERETLGL
YLTGHPINRFRKELRHYVAGFLSEVNETRKNELVAIAGLVIDVRVIVNKRGQRFAVVTLD
DKSARMDVMLYSNEYDSFQHLLEKDRILWAKGEVRFDNFSGGNRMIAREVMSIDQARESF
LRHIAITVTSEQLKNGMAAKLQNELQPYAQGTCPLLIHFKGDKANATLRAGPQWYVRPAD
ELIHHLRELLGEQWVSLEF
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgactggcgataccaacttcgttcatctgcgcattcacagcgatttctctatgattgat
ggcctgaccaaaatcgggccgatctgtcagggcgtggctgaggccggcatgccggcgatg
gcgttgaccgatcaaatgaatttctgtgggctggttcaatattatggcgcggcgcacaaa
caggggcttaaaccgattgtgggctgtgatctttgggtacaaagtgactacccgcaaggt
gaagtgttccggttgacagcactggcgctgaacaacaccggctatcagcaattgatccaa
ctggtttcgaaagcctatttacgtggtcacgtcggcgataaaccggttatcgataaagac
tggttgattgagcacaacgaaggggtgctgttgctgtccggcgcccgtgaaggggatgtc
ggacgggcgttactgaaggggcattcggaggcgttgcaacagtgcctggcattttaccag
cgctattttccggaccgttactaccttgagttgattcgtaccggccgccctgacgaagaa
gattacctgcataaagccgtggccgtagccggtgaataccagttaccggtggttgcgacc
aacgaagtggtgtttttaaaagaggaaaactttgaggcccacgaaattcgtgttgccatt
catgatggctaccaactgggtgataaacggcggccgaaaaaatactcggcacaacagtat
ttgcgctcggcagaagagatgcaggcgttgttcgcggatttgcccgaagcgttacaaaac
accgtagaaatcgctaagcgctgtaacgtcaccattcgcctgggcgagtatttcctgccg
gaattcccgaccggcgacctcagtaccgaagactttctggttaaagtgtcacaagaaggt
ctggaagagcgtctggcgtttttatttcctgacccggacgagcgggcacggcgacgtccg
gaatacgacgagcgtctccagactgagttgaacgttatcaaccaaatggggttcccgggt
tacttcctaatcgttatggaatttatccagtggagtaaggataatggcattccggtaggg
cccggacgtggttccggtgctggttcactggtcgcttatgcgttaaaaattaccgatctg
gacccgttggaatttgacctgctgttcgaacgttttctaaaccctgaacgggtatcgatg
cccgactttgacgtcgacttttgtatggatcgtcgtgatgaagtcatcgatcacgtggcc
gacttgtacggccgtgatgcggtatcgcagatcattacgttcggtaccatggcggcgaag
gcatcgattcgcgatgtcgggcgagtgctgggtcacccctatggttttgttgacgggatt
tccaaattggtgcccggcgaccccggtatgaccctggcaaaagccttccagcaagtgcct
gaactgggtgagcgctacgatcaggacgaggaagtcaaagagctgatcgattttgcgcgg
atcctggaaggcgtcacccgtaacgccggcaagcatgctggtggggtagtcatctcgccc
accaccattactgattttgcggcgttgtattgcgacgatgaaggcaaaaacccggtcact
cagtttgataaaaacgacgttgagtccgcgggtctggtgaaatttgactttcttggcttg
cgaaccctgaccatcattcagtgggcgctggacatggtcaatgcccgacatcaacgtgac
ggcaagccgctggttgatatcaatgcgataccgctggatgacccgcaatgctttaagatt
ttaaagcgagctgaaacgaccgcggtattccagttggaatccgcgggcatgaaaaaattg
attttacgcctgttgccggacagctttgaagacatcatcgccctggtggcgctgtttcga
ccgggaccactggaatcgggcatggtggacaactttatcgaccgtaagcatggccgtgaa
gaagtttcctatcccgacgccacctatcagcacgactgcctgaaaccgatattggagccg
acctacggggttattttgtatcaggaacaggtgatgcaggtcgcgcaggtgatggccggt
tactcattgggggcggccgacctattgcggcgcgcaatgggtaagaaaaaacccgaggaa
atggccaaacagcgggatatcttccgtgagggcgcggcgaaaaataacatcgacccagaa
ctggcgatgaaaatcttcgacctggtggaaaagttcgccgggtatggttttaataaatcg
cactcggccgcctacgcgttggtttcttatcagacgctgtggatgaaaacccattatccg
gcggagtttatggcggcggttatgtccgcggatatggacaataccgataagattgtgaca
ctggcggacgaatgcgagcgcatggggctgaagctgttgccgccggatgtcaataaaggt
cagtataaattcaccgtcgatgaacagggacgcgtggtttatggcattggcgccataaaa
ggcgtaggtgaaggcccgattgaagcgatcattgaggcgcgtgagcagggtggtgctttt
actgatctatttgatttttgctgtcgggtcgatttaaaacgcctgaataaacgggtgatg
gagcgactgatccgcggcggagccatggataacctcgggcctcatcgggcaaccttaatg
gcctcgttggaaaaggccatgcgtcaggcggaacagcatcataaggctgagagtattggc
cagagcgatatgtttggcgtgttaaccaccgaacctgaggccgttgagcacgaatttgtt
aacgttaaaccctggccggaagcggtttggctggaaggcgagcgggaaactctggggctg
tatctgaccggccacccgatcaatcgttttcgcaaggaattacggcattacgttgccggc
ttcttatcggaagtgaacgaaacgcgcaaaaatgagctggttgctatcgctggcctggtc
attgatgtgcgggtcattgtcaacaagcgtggacagcgcttcgcggtagtaacattagac
gataaaagcgcgcgcatggatgtaatgctttatagtaacgagtacgatagtttccaacat
ttactcgaaaaagacagaattttgtgggcaaaaggggaggtacgatttgataacttctcc
ggtggtaatagaatgatagcccgtgaagtgatgagtattgatcaggcgcgggagagtttc
ctgcgtcatatcgccattaccgtgaccagtgaacagttaaaaaatggcatggccgccaag
ttgcaaaatgaattgcaaccctatgcgcaaggaacttgcccgttactgattcattttaag
ggcgacaaggcgaatgcgacgttacgagccgggcctcaatggtatgtgcgcccggctgac
gaattaatacaccatttaagagagctgctgggtgagcagtgggtctcgttagaattttaa
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integrated database retrieval system
