Idiomarina sp. OT37-5b: C5610_09040
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Entry
C5610_09040 CDS
T05379
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
idt
Idiomarina sp. OT37-5b
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
idt03016
]
C5610_09040 (rnd)
Enzymes [BR:
idt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
C5610_09040 (rnd)
Transfer RNA biogenesis [BR:
idt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C5610_09040 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
ATP-synt_C
Motif
Other DBs
NCBI-ProteinID:
AVJ56427
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All DBs
Position
complement(1922896..1924056)
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AA seq
386 aa
AA seq
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MSLIDVPKSVLDYQLIDTTDALQDFCESARSAGWFAIDSEFVRQRTYYAKLGLLQVHAAG
TTAVIDPLVKLNLASLWQLIADPAVTSVLHAGGEDIELFYNQSGNAPQRIFDTQIAAGFC
GLGSAMGYAKLVEQLCGGVELDKSLSRTDWLRRPLTPQQLDYAAADASYLSAMYPYLLRL
CEDKDVLDIVLAESRLQVEKRTQEIAPDLLYLFIGNAWQLNPQQLAVLQRLTAWRQRKAQ
SRDMPIGFVFKDGVLLELARRQPSSEKQLHGIDGLPPLTRKYSGAELIEVIQDSRQRPQS
DYPAPLQRLDDMPGYKDAVKTIKQGIQRVATELDVDPVLIASRKQINDFLNFHWQFSSHQ
QQRLPQPDLKQGWRWRLLEAELSGLI
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
ttgagtctgatagatgttcctaagtcggtacttgattatcagttaatcgatacgaccgat
gccttgcaggacttttgtgaatcagcccgctctgcgggctggtttgcaattgacagtgaa
tttgtacgacaacgtacctattacgccaaactggggttgcttcaggttcatgcggccggc
accacggcggtgattgacccgttagtgaaactgaatttggcgtcgttatggcagttgatt
gcggacccggctgtgacgtccgtattgcacgcgggtggtgaagatattgaactgttttac
aatcagtccggtaacgcgccgcaacgtatttttgacacacaaattgctgcgggcttttgc
gggctcggtagtgccatgggctacgccaaactggtggagcaattgtgtggcggagtggag
ttggataaaagtttatcgcgcaccgactggctgcggcgcccgttaaccccgcaacaattg
gactatgcggctgccgatgccagttacttatcagcgatgtatccctatttgctgcgcttg
tgtgaagataaagacgtactggacattgtgctggcggaaagtcggctgcaagtcgaaaaa
cgtactcaggaaatcgcgccggatttactctatctgttcattggcaatgcctggcaactg
aacccgcaacagctagcggtgttacagcgcttaacggcgtggcgtcagcgtaaggcacaa
agtcgtgatatgccgattggctttgtcttcaaggatggcgtgctgctggagttggcgcgt
cgtcagccgagctcagagaagcaactgcacgggattgatggactgccaccgttgacgcgg
aagtattccggtgccgaactgatagaagtgattcaggatagccgacaacggccgcagagc
gactatccggcgccgttgcaacgcttagatgacatgccgggctacaaagacgcggtgaaa
acaataaaacagggtattcagcgagtggcgacggaactggatgttgacccggtgctgatt
gcctcacgcaagcaaatcaatgactttttaaacttccattggcaattttcatcgcatcaa
caacaacggctaccgcagccagatttaaagcagggttggcgctggcgccttcttgaggca
gaattaagtggtttaatttag
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