Idiomarina sp. OT37-5b: C5610_09940
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Entry
C5610_09940 CDS
T05379
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5610_09940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_09940
03009 Ribosome biogenesis [BR:
idt03009
]
C5610_09940
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5610_09940
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5610_09940
Ribosome biogenesis [BR:
idt03009
]
Prokaryotic type
rRNA helicases
C5610_09940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
UvrD-helicase
Helicase_RecD
MatB
DUF3420
Motif
Other DBs
NCBI-ProteinID:
AVJ57377
LinkDB
All DBs
Position
complement(2094219..2096000)
Genome browser
AA seq
593 aa
AA seq
DB search
MSNSISAMSFADMALPAAIFNQLEKLGFTQPTPIQQQSIPALLDGKDVLGEAQTGTGKTA
AFGLPALAAIDPSVRQTQVLVVTPTRELAIQVAEAIESFAQQLKGVDVATVYGGSAFGPQ
IQALKKGTPVIVGTPGRLIDLLNKNVLKLDALRVAVLDEADEMLNMGFIEDIEKILSAVP
ESAQRALFSATMPGAIRKLAKTFLTDPLNIQIEAIAREKATIKQKAWKVAGLTKMTALTR
LLEVTPYQRALIFVRTRQDTMDVAELLQRSGFKASPLSGDLNQAQREQTVSQLRSGHIEI
LVATDVVARGLDVPEITHVINYDLPGDTESYVHRIGRTGRAGREGEAILFFRPKERHLLR
HYERLTNSSIEYFEVPNAQQLSEHRQQQLLTTIRATLEQENHQPVEQLLQKWLQESDLSA
EQIALALLKQQHKQRPLFLKEDRIVRERPERGERTDRADRGDRKKARGPRPTDADFDTYK
IQVGREHGARPGDIVGAIANEASMDSRFIGQIQLFDQHSLVQLPKGLPGEVVKVLKKARV
RQQPMSLELTSEQVRRAPRPPRTGGRDGGGRDSARGERRRDGRRGQGAARRFN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaattctatttcagcgatgtcgtttgccgacatggcactacctgctgctatcttt
aaccaactggaaaagctgggttttacccaaccgactcctattcagcaacagtcaattccg
gcgttactggacggtaaagatgtactgggtgaagcccagacaggaaccggtaaaacggca
gcatttggcttgccggcgctggccgcaattgatccatcagtgcgtcaaacgcaggtactg
gttgttactccgactcgcgagttggcgattcaggttgcggaagccattgaaagctttgcg
caacagctaaaaggtgttgatgttgctaccgtttacggtggctcggcatttggaccacaa
atccaggcccttaagaagggtactccggtcatcgtcggcacgccgggtcggttgatcgat
ctgcttaataagaacgtgctaaaactggacgccttgcgcgttgcggtactcgacgaagct
gacgaaatgttgaacatgggctttatcgaagacatcgaaaagattcttagcgcggttcct
gaaagtgctcaacgtgcgttgttctcggcaaccatgcctggcgctatccgtaagttggcg
aaaaccttcctgaccgatccgcttaacattcagatcgaagcgattgcccgtgaaaaagcg
acgattaagcaaaaagcgtggaaagtggcgggcttgaccaaaatgacggcattaacccgt
ttgttggaagtcaccccgtaccaacgtgcactgattttcgtgcgtacccgtcaggatacg
atggatgtggcggagctgttgcaacggtctggctttaaagcatcgccgttaagtggtgac
ttgaatcaggcgcaacgtgagcagacagtgagtcaattgcgtagcggtcacattgagatt
ctggtggcaacggatgttgttgcccgtggtcttgacgttcctgaaattactcacgtcatt
aactatgacttaccgggtgatactgagtcgtacgttcaccgtatcggtcgtactggccgc
gcgggtcgtgaaggggaagcgattttattcttccgtccgaaagagcgtcacttgttgcgt
cattatgagcgcctgaccaactcgtcgatcgagtactttgaggtgcctaacgcacagcag
ttgagtgaacatcgccagcaacaattactgacgaccattcgcgcaacactggagcaggaa
aaccatcaaccggtcgagcaattgctgcaaaaatggttgcaggaatcggatctgagcgcg
gaacaaatcgcattagctctgttaaagcaacaacacaagcagcgtccgttgttcctgaaa
gaagatcgtatcgtgcgtgaacgcccagaacgtggtgaacggactgaccgtgccgatcgc
ggtgatcgtaagaaggcacgtgggccacgcccaactgatgctgactttgatacctataaa
attcaggtcggtcgcgagcatggcgctcgcccgggcgacattgttggcgcgattgctaac
gaagcgtcaatggacagccgctttattggtcaaatccagttatttgatcagcactcgtta
gtgcagttaccgaaaggtttgccgggtgaggtagtaaaagtattgaagaaagctcgtgtt
cgtcagcaaccaatgtcactcgaactgacctctgagcaggtgcgtcgtgcgccacgtcca
ccacgtactggtggtcgtgacggaggtgggcgtgacagtgcgcgcggtgagcgccgtcgc
gatggtcgtcgtggccagggcgcagcgcgtcgctttaactaa
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