Idiomarina sp. OT37-5b: C5610_11050
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Entry
C5610_11050 CDS
T05379
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
idt
Idiomarina sp. OT37-5b
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
idt03009
]
C5610_11050
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5610_11050
Ribosome biogenesis [BR:
idt03009
]
Prokaryotic type
rRNA helicases
C5610_11050
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
UvrD-helicase
SWI2_SNF2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVJ56775
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All DBs
Position
2334086..2335300
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AA seq
404 aa
AA seq
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MAIDWQDLELDDALIHPLLELGLKKPAKVQQQTIPVALDGLDVLLSSPTGSGKTLAFLLP
ALQHLLDYPRQSPGPARILVLTPTRELAEQIHQQAKAFEASTGMRSIVVTGGINYGSQLS
QLEKSHELLIATPGRLLDLLQAEQYELESVEWLIIDEADRMLDMGFTKSVEEIARRARHR
QQNILSSATLASGGVEIFAKRLLNEPERIEVQPPKRERGKILQYVYLADTAEHKQQLLLR
TLSEYEGRQIVFVKTREKVAQLAGLLQAQLTYPVLHLRGDLPQAERQRIIEQFKQHPKAL
LVATDVASRGLDIEDVSVVVNFDLPKQADTYVHRIGRTARAGAKGVAVSLVEAHDALLLG
RIERYTEQKLERRVFDDLRPKYKFPATDKKRSKKKKAAKKNKKR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgattggcaagatttagaactcgacgacgcgttaattcacccgttattggaa
ctggggcttaaaaagccggccaaagttcagcaacagaccattccggtcgcactcgacggt
ctggatgtactgctcagctcccccaccggcagcggcaagacattagcgttcctgctaccg
gcattgcagcacctgttggactacccgcgccaatcaccgggtccggccagaattctggtg
ttaacacccacgcgcgaactcgccgagcagatccatcagcaagccaaagcgttcgaggcc
agtacagggatgcgctcgattgttgttaccggaggcatcaattacggcagccaactgagc
cagttggaaaaatcccacgaactactgattgccacgcccggccgtttattggatctgcta
caagcggaacaatacgaactggaaagcgttgaatggcttatcatcgatgaagcagaccgg
atgctggatatgggctttaccaagtccgtcgaggaaattgcccgacgtgcccgtcaccgt
cagcaaaacattctttcttctgccacgcttgccagcggcggcgttgagatctttgctaaa
cgactgctgaatgagccagaacgaattgaagtgcagccaccaaaacgcgaacgtggtaag
attctgcaatacgtctacttggcggataccgccgaacacaaacaacagttattactgcgt
acattgtccgagtacgaaggtcgtcagatcgtgtttgtcaaaactcgggaaaaagttgcc
cagcttgccggacttttgcaagcgcaactaacgtatccggtactgcatttgcgcggcgat
ctgccacaggccgagcgccagcgtattatagagcagtttaaacagcaccctaaggcattg
ctggtagcaacagacgtcgcctctcggggtctggatatcgaagacgttagcgtggtggta
aacttcgacttgccaaaacaggccgatacctacgtacaccgtattggtcgcaccgctcga
gccggcgctaaaggtgtcgccgtctccctggttgaagctcatgatgcactgctgctagga
cgtattgagcgctataccgagcaaaaactggaacggcgtgtgtttgatgacttacggccc
aagtataagtttcctgcaaccgataagaaacgcagcaagaagaaaaaagccgcgaagaaa
aacaaaaaacgctaa
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