Idiomarina sp. OT37-5b: C5610_11470
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Entry
C5610_11470 CDS
T05379
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C5610_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idt03021
]
C5610_11470
Transcription machinery [BR:
idt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C5610_11470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IntS14_b-barrel
Motif
Other DBs
NCBI-ProteinID:
AVJ56844
LinkDB
All DBs
Position
complement(2433679..2435514)
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AA seq
611 aa
AA seq
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MQQSRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEIVDSDQIEDIIRMINDMGIRVFESAP
DADDLMMAESAADEDAAEEAAQALATVDSEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEEGINQVQCSVAEYPEAINFLLEQWDSYEAEELRLTDIIVGFIDPDEVDEAPVSATH
VGSELSEEELEEEDDDDDDSEDEEEADTGIDPEFARAKFTELREQYEVTRQAIIDNGRDH
PKARAEIDKLSELFKQFRLVPKQFDRLVKDMRDMMHRVRVQERLVMKACVEQAGMPKRAF
MKAFSGNENSMAWVDEHINAGEGYSEGLREIRGDIERSVTKLLEVERETGLTIAKVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEE
LAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRN
SVREVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEQLKSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagagtcggcaatcgcaacttaaagtccttattgcgaaaggcaaagaacaaggg
tttttaacattcgctgaggttaatgaccatttacctcaggaaattgttgattccgatcag
atagaagatattattcgcatgatcaatgacatgggtattcgcgtgttcgagagcgcgccg
gatgccgatgacttgatgatggcggaaagtgctgcggacgaagatgccgcagaagaagcc
gcacaagcacttgcaacggttgacagtgaaattggtcgcacgaccgatccggtgcgcatg
tatatgcgtgagatgggtaccgttgagctgttaacgcgcgaaggcgaaatcgacattgcc
aagcgtattgaagaaggcatcaaccaggtacagtgctctgttgctgaatacccggaagcg
attaacttcctgcttgaacaatgggattcctacgaagccgaagagcttcgcctgaccgat
atcattgttggctttatcgaccccgatgaagtggacgaggcaccggtcagcgccacgcac
gtcggttctgaactttcagaagaagagctggaagaagaagacgatgatgacgatgacagc
gaagacgaagaagaagccgatactggcatcgatcctgagtttgcccgcgcaaaattcact
gagctacgtgaacagtacgaagtgacccgtcaggccatcattgataatggccgtgaccac
ccgaaagcgcgcgctgaaattgataaattgagcgagctgttcaagcagttccggttagtg
ccaaagcagtttgatcgtctggtgaaagacatgcgtgacatgatgcatcgtgtccgcgtg
caagagcgcctggtgatgaaagcttgtgtggaacaggctggcatgccaaaacgcgcgttc
atgaaagcattctctggtaacgagaactcaatggcctgggtcgacgagcacatcaacgcc
ggtgaaggttattctgaaggtttgcgtgagattcgtggcgatatcgaacgtagtgtcacc
aaactgcttgaagtggaacgtgaaaccgggctaaccattgccaaggtaaaagacattaac
cgccgcatgtcgattggcgaagcgaaagcgcgccgggccaaaaaagaaatggtcgaagcg
aacctgcgtctggttatttcaattgctaaaaagtacaccaaccgtggtctgcaattcctg
gatctgattcaggaaggtaacatcggcctgatgaaagcggtggataagttcgagtaccgt
cgtggttacaagttctcaacctacgcaacgtggtggatccggcaggcgatcacacgttcg
atcgcggatcaggcgcgtaccattcgtatcccggtgcacatgatcgaaacgatcaataag
ctgaatcgcatctcacgtcagatgttgcaggaaatgggtcgggagccgctgccggaagag
ctggcagaacgaatgatgatgccggaagataaaattcgcaaagtgcttaaaattgcgaaa
gagccgatttcgatggaaacgccgattggtgacgacgaagattcgcatctgggtgacttc
attgaagacaatacgctggatctaccgattgactcagcgacctcggaaagcttgcgcaat
tcggttcgtgaagtgcttggcgggttgaccgcgcgtgaagcgaaagtgttgcgtatgcgc
ttcggtattgatatgaatacggaccacacattagaagaagtgggtaagcagtttgacgta
acaagggaacgaattcgtcaaattgaagccaaagcattacgtaaattgcgtcatccaagt
cgctctgaacaactgaagtcgttcctggacgagtaa
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