Idiomarina sp. OT37-5b: C5610_12265
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Entry
C5610_12265 CDS
T05379
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5610_12265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_12265
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5610_12265
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5610_12265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVJ56985
LinkDB
All DBs
Position
2604922..2606190
Genome browser
AA seq
422 aa
AA seq
DB search
MNKTHLTETRFAELGLHPQVEQAMTHAGFEYCTPIQALSLPVALAGQDVAGQAQTGTGKT
LAFLLATFNRLMNKPQSTTRNGPRALIMAPTRELAIQIAHDAEPLTKNCDLNMSVIYGGE
GYEVQKEQLASQPDILVGTTGRLIDFYKQGLFALDNIEVVVLDEADRMFDLGFINDIRYL
LSKMPPPAQRLNLLFSATLSYRVQELAYEHMNAPAKVEVEPQQKTGVRISEELFYPSKPD
KMPLLLTLIEEDWPDKAIVFANTKHGCDKVYQWLAVNDHRVGLLTGDVPQKKRLKILEDF
AQGQLDILVATDVAARGLHIPAVSHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACE
EYVYNLPAIEEYIGHPIPVTNYDETALLSDLKRPRPTHRRRRSHSGGRGKPRQRKPGAQR
KN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacacatcttacagaaacacgcttcgccgaacttgggttacatcctcaagtc
gagcaagctatgacgcacgctggttttgagtattgtactccgattcaggctttaagtctt
cctgttgcactggcaggtcaagatgtagccggtcaagcgcaaacaggaaccggtaaaacc
ttggcatttctgctggcgactttcaaccgcttaatgaacaagccacagtctacaacccgt
aacggcccccgtgcactgattatggcgccgacacgcgaattagccattcagattgcccat
gatgccgagccactgaccaagaactgtgacctgaacatgtccgttatatacggcggtgag
ggctatgaggttcaaaaagaacagctggccagtcaaccggacattttagtgggtaccacc
ggccgcctgatcgatttctataagcagggcttatttgccctcgataatattgaggtggtg
gtgctggatgaagccgatcgtatgttcgatttgggctttattaatgacatccgctatttg
ctcagcaagatgccaccgccggcgcaacggctgaatttattgttctccgcgacactatct
taccgtgtgcaggagctggcatacgagcacatgaacgctccggcgaaggtcgaagtcgag
ccgcaacaaaaaaccggcgtccgcatcagtgaagagcttttttatccatccaagccggat
aaaatgccgctgttattgacactgattgaagaggactggcccgataaagcgatcgtattt
gctaacaccaagcacggttgcgataaggtttaccaatggcttgcggtaaacgatcatcgt
gttggcttgctcaccggtgatgtgccgcagaaaaagcgcctgaagatcctcgaggacttt
gcccaggggcaactggacattctggtcgccaccgacgttgccgctcgcggcctgcacatc
ccggccgtcagtcatgtctataattttgatttgccggacgattgcgaagactacgttcat
cgcattggtcgtaccggccgtgccggcgccagtggcgcagccattagcctggcctgtgaa
gagtatgtttacaacttaccggccatcgaggagtacattggccatccgattccggtaacc
aattacgacgaaacggcattgctgagcgatttaaaacgtccacgccctacccatcgtcga
cgtcgcagtcattccggcggtcgtggtaagcctcgccaacgtaaacctggagcgcagcgc
aaaaactag
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