Idiomarina sp. OT37-5b: C5610_13225
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Entry
C5610_13225 CDS
T05379
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03420
Nucleotide excision repair
idt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C5610_13225
03430 Mismatch repair
C5610_13225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
idt03400
]
C5610_13225
Enzymes [BR:
idt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C5610_13225
DNA repair and recombination proteins [BR:
idt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5610_13225
MMR (mismatch excision repair)
Other MMR factors
C5610_13225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_22
AAA_12
ResIII
DUF4391
Motif
Other DBs
NCBI-ProteinID:
AVJ57167
LinkDB
All DBs
Position
complement(2823683..2825854)
Genome browser
AA seq
723 aa
AA seq
DB search
MSSTHPLISGLNDKQRQAVSADDGHMLVLAGAGSGKTRVLVHRIAWLIQQRNYSPYSILA
VTFTNKAASEMRGRVEQLLGSSVRNMWIGTFHGLAHRLLRAHYMDVGLPQNFQILDSDDQ
QRLIKRLIKSMNLDEKRWPAKQAQWYINGKKDEGLRAQHIETFDPNEQTLKSIYQAYQES
CDRAGLVDFAELLLRAHELLRHNKSVREHYQRRFRHILVDEFQDTNAIQYAWIRLLSGAE
NFVTIVGDDDQSIYGWRGARVENIQQFMDDYPAVTTIRLEQNYRSTGTILRAANAVIANN
AERLGKDLWTDGNEGEPVSLYAAFNEMDEARYIVGRIEEWRDQGNALQDVAILYRSNAQS
RVLEEALLHARMPYRIYGGLRFFERQEIKDALGYLRILSNRDDDAALERVINTPTRGIGN
RTLDIIRQTARENQQSLWQAASLMVAEKALAGRARNAVAAFIDFIEGLDDETEDFTLGRL
SDEVIRRSGLLAMYEAEKGEKAETRVENLKELVNACQNFNLDDSEEDMSPLNAFLAHAAL
EAGEEQADEYQDAVQLMTLHSAKGLEFPLVFMTGVEEGVFPSQQSMDEPGRLEEERRLCY
VGMTRAMQKLVLTYAEQRRIYGQEFFHKVSRFVSEIPADTLHEVRLQTQVQRPSSYSRFN
NAASHEAFEQTGYQLGQRVRHPKFGDGTVLNYEGTGPQSRIQINFDQVGSKWLVVAYARL
EPC
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtacgcaccctttgatttcaggactcaacgataaacaacgtcaggcggttagt
gctgatgatggtcatatgctggtgctggcaggggctgggagtggtaaaacgcgggtgttg
gtgcatcgtattgcctggctgatccagcaacgtaattattctccttacagtattttagcg
gttaccttcaccaataaggcagcatccgagatgcgcggccgtgtagaacagttgttaggc
agctcggtgcgcaatatgtggattggcacctttcatggtctggctcaccggttattgcgc
gcgcattatatggatgttggcttgccgcaaaactttcaaatccttgatagcgatgatcaa
cagcggctgattaagcgactgataaagtcgatgaatctggatgaaaaacgttggccggcc
aaacaggcgcaatggtacatcaacggtaagaaagacgaaggtttgcgggcgcaacacatc
gaaaccttcgatccgaacgaacagacgttaaagtccatctatcaagcctatcaggaaagt
tgcgatcgggcggggttggttgatttcgcagagcttttgttacgcgctcatgaactgttg
cgtcataacaaatcggtaagagaacattatcagcgtcgtttccgacacatattggtggac
gaatttcaggataccaacgccattcagtacgcttggatcaggttgctttccggtgcagaa
aattttgtcactattgtcggcgatgacgatcagtccatttacggctggcgtggtgcgcgg
gttgaaaatatacagcagtttatggacgactacccggcggtaaccactatccgactggaa
caaaactatcgttcaacaggaaccatactgagagctgccaatgcggttatcgccaacaac
gcagagcgtcttggtaaggatctctggacggatggtaatgaaggcgaaccggtcagcctc
tatgccgcgtttaatgaaatggatgaagcccgttacatcgttgggcgtattgaagagtgg
cgtgatcagggtaatgcgttgcaggacgttgcgattttatatcgcagtaacgcgcagtcg
cgcgtgctggaggaggccttgttgcacgcccgtatgccctaccgcatctatggcgggcta
cgcttctttgaacgtcaggaaattaaagacgcgttagggtatctgcgtattttatcaaat
cgtgatgatgacgccgcccttgagcgagtcattaatacccccactcgggggattggtaac
cgcacgttggacatcattcgtcagacggcgcgagaaaaccagcaatcgctatggcaagcg
gcgagtttaatggttgctgaaaaagcactggcaggacgagcaagaaacgccgttgcagcg
tttattgactttattgaagggttagacgacgaaaccgaagacttcacgctgggtcgtttg
agtgacgaggtgatccgtcgctcaggtctgttggcgatgtacgaagctgagaaaggcgaa
aaagcagaaacccgtgttgagaacttgaaagagctggtcaatgcctgtcaaaactttaac
ctggatgacagcgaagaggacatgagtccgcttaacgcatttttggcgcatgcagcactc
gaggctggtgaagaacaggcggatgagtatcaggatgctgtgcagttgatgacgcttcac
agtgccaagggcctggagtttccactggtgtttatgaccggtgttgaggaaggcgtcttt
ccgtcacaacagtcgatggacgaacccgggcgactcgaagaagaacgtcgcctttgttat
gtcggaatgacgcgagccatgcaaaagctggtactgacttatgcggagcaacgacgcatt
tatgggcaagaattcttccataaggtgagccgattcgtctctgaaataccagctgatact
ttacatgaagtgcgtcttcagactcaggtccaacgcccatccagctacagccggtttaat
aacgcagcaagccatgaagcctttgagcaaaccggttatcaactcggtcagcgggtacgg
catccgaaatttggagacggcacggtattgaattatgaaggcacaggaccacagagcaga
atccagataaacttcgatcaagtgggcagcaaatggttggttgtcgcctatgcgagactg
gaaccttgttaa
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