Idiomarina sp. OXR-189: UM402_11550
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Entry
UM402_11550 CDS
T11485
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
idx Idiomarina sp. OXR-189
Pathway
idx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UM402_11550 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
idx03021
]
UM402_11550 (rho)
03019 Messenger RNA biogenesis [BR:
idx03019
]
UM402_11550 (rho)
Transcription machinery [BR:
idx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UM402_11550 (rho)
Messenger RNA biogenesis [BR:
idx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UM402_11550 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WPZ01092
LinkDB
All DBs
Position
complement(2353806..2355074)
Genome browser
AA seq
422 aa
AA seq
DB search
MNLTELKDKPVNELVELADSMGLENMARLRKQDIIFAILKAHAKSGEDIYGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHADERFRLERGNGSTEDITARVLDLSAPIGKGQRGLIVAPP
KAGKTLLLQNVATSIAANHPEAELIVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKLAEKRVFPAIDF
NRSGTRREELLTSQDELQKMWILRKIMNPMGEVEAMEFLIDRLQMTKTNDEFFESMKRQR
NS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaactgaacttaaagataaacccgtaaacgagcttgttgagctcgcggactca
atgggccttgagaatatggcccgtctgcgcaagcaggacatcatttttgctattttaaag
gcgcacgcaaaaagcggtgaagacatatacggcggcggtgtgttggaaattttgcaggac
ggcttcggcttcttgcgatcagccgactcgtcatatttggccggtcccgatgacatttat
gtatcgcctagccaaattcgtcgctttaacttacgcactggcgacactattggcggcaaa
attcgaccgccgaaagacagcgaacgttattttgctcttctgaaaattcgcgaagttaac
ttcgacaagcctgaaaactctcgtaataaaattctttttgaaaacctgacaccactgcat
gcagacgaacgttttcgtttagagcgcggcaatggcagtactgaagatattacggcgcgt
gttctcgacttgtcggcacctattggtaaaggccagcgtggtcttatcgttgcaccgccg
aaagcgggtaagacgctattactgcagaacgttgcgacgtctattgcggcgaatcatcct
gaagcagagcttattgtactgcttatcgatgagcgtccggaagaagtaacggaaatgcac
cgtttggtgcagggtgaagtggttgcttcaaccttcgatgagcctgccagccgccacgta
caggttgctgaaatggttatcgaaaaagcgaagcgtttggttgagcacaaaaaagatgtc
gtcatcttattagactcgattactcgtttggcgcgcgcttataacaccgttattccaagc
tcaggtaaagtcctgaccggtggtgtagacgctaacgcgctacacaagccaaaacgtttc
tttggtgcagcacgtaacgtcgaagaaggcggcagcttaaccattattgcaacggcgctt
atcgataccggctcgaagatggacgaagttatctacgaagagtttaaaggtaccggtaac
atggaactgcatttgaaccgtaagttggcagagaaacgtgttttccctgcaatcgacttt
aaccgttcaggtacacgtcgtgaagaattgctgacgtcgcaggacgagctgcagaaaatg
tggatcctgcggaagattatgaacccaatgggcgaagttgaagccatggagttcctgatt
gaccgtttgcagatgactaagaccaacgacgaattcttcgaatcgatgaagcgtcaacgc
aacagctaa
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