Ischnura elegans (blue-tailed damselfly): 124159268
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Entry
124159268 CDS
T09104
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
iel
Ischnura elegans (blue-tailed damselfly)
Brite
KEGG Orthology (KO) [BR:
iel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
iel03016
]
124159268
Enzymes [BR:
iel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124159268
Transfer RNA biogenesis [BR:
iel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124159268
Prokaryotic type
tRNA splicing ligases
124159268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
Motif
Other DBs
NCBI-GeneID:
124159268
NCBI-ProteinID:
XP_046390922
LinkDB
All DBs
Position
5:complement(93105368..93117526)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINSHCWRIKKGFQPNMNVEGVFYVNDHLEKLMFDELRNACRPGMV
GGFLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMNDPTSVVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAGKMGIESKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHLTPDDLDMHVIYDVSHNIAKIE
EHIVDGKQKTLLVHRKGSTRAFPAHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM
QETFGSTCHGAGRALSRAKSRRNLDYQEVLNRLEQMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcgccagtataatgaagaacttaaatatctggagaaaattaattctcactgt
tggaggattaagaaggggttccagcctaatatgaatgtcgagggagtattttatgtgaat
gaccatttggagaagttgatgttcgacgagttgagaaatgcttgccgtccggggatggtc
ggtggctttctgcctggaatgaagcaaattgccaatgtagcagctttaccaggaattgtg
gggagatctgtcggtcttccagacgtccactcaggctacgggtttgccattggtaacatg
gcagcttttgacatgaacgatcccacttcagttgtgtcgcctggtggagtaggctttgat
attaactgtggtgtgagacttctgcgcactaatctctttgagaaagatgtgttgccagta
aaggaacaattggctcaaagtctttttgatcatatacctgttggagtgggctccaaaggt
ataattcccatgaatgcccgtgatttggaagaagctcttgaaatgggaatggactggtct
ctaagagaaggctacatttgggcagaggacaaagaacactgtgaagagtatggaaggatg
ttgaatgcagatccctccaaagtcagcatgagagcaaagaagaggggacttcctcagctg
gggacattgggtgcaggaaatcactatgcagagatacaggtggtggatgaaatttatgac
aagtgggctgcaggcaagatgggaattgagagcaaaggccaaatttgcgtgatgattcac
tctggcagcagaggatttgggcatcaagttgcaacagatgcactggttcagatggaaaag
gctatgaagagagacaacattgagacaaatgacagacagctagcttgtgctcggattaat
tctgtcgaaggtcaagactatttgaaatccatggctgctgctgctaactttgcttgggtt
aacagaagctctatgacattccttagtagacaagcatttgcaaagcagttccacttaaca
cctgatgacttggacatgcatgtcatttatgatgtttcacataacatagctaaaatagag
gagcacattgttgacggcaaacagaaaaccttattagttcacaggaagggttcaactcga
gccttccctgctcaccatccactgattcccgtggattaccagttgactggccaacctgtg
ttaattggcggaactatgggaacatgcagttatgtcctcactggaaccgagaagggaatg
caggaaacgtttggctcaacctgtcatggggctggtcgtgcattatcccgggctaagtct
agaaggaatttggattaccaggaagtgctgaataggctagaacaaatgggcatttcaatt
agagtggcatctcccaagttggtgatggaagaagctcctgaatcctataagaatgtgact
gatgtcgtggacacctgccatgctgctggaataagcaagaagtgcataaaacttaggcca
attgctgttatcaagggttaa
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