Ischnura elegans (blue-tailed damselfly): 124169805
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Entry
124169805 CDS
T09104
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
iel
Ischnura elegans (blue-tailed damselfly)
Pathway
iel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124169805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iel03019
]
124169805
03041 Spliceosome [BR:
iel03041
]
124169805
Messenger RNA biogenesis [BR:
iel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124169805
Spliceosome [BR:
iel03041
]
Complex B
Other components
Prp19-related factors
124169805
Complex C
124169805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
NRDE-2
DHR-2_Lobe_A
PPR
TPR_10
TRPM_tetra
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
124169805
NCBI-ProteinID:
XP_046404524
LinkDB
All DBs
Position
12:5721025..5753384
Genome browser
AA seq
885 aa
AA seq
DB search
MPTSFEVPGEIEIVFDEDDLAYEEEILRNPFSVKHWLRYIEHKKDAPKQVINIIYERALK
ELPGSYKLWYNYLKLRRRQIKGRCITDPSYEDVNNAFERALVFMHKMPRIWLDYCQLLVD
QKRVTRTRQVFDRSLRALPVTQHHRIWPLYLEFVRSHHSHETAVRVFRRYLKLCPEDSED
YIEYLISIGRLDEAAVKLASIVNREEFVSKHGKSNHQLWNELCELISKNPDKVRSLCVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF
EELSLTRRMEEVSEKPISTEEDEVELELRLARFEHLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLFQGKPHEIINTYTEAVQTVDPQLAVGKLHSLWAAFARFYEDNGQIEDARIVLEKA
THVTYQKVDDLASIWCQWAEMEIRNENYEEAVRLMQRATAPPPRKVAYHDETETVQARLY
KSLKVWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGLFLEEHKYYEEAFRAY
EKGIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEHCPAKFAKALYLLYAK
LEEEHGLARHAMAVYERATKAVLPEEQFELFNIYIKKAAEIYGVARTRQIYEQAIEILAE
EHAREMCVRFAQMETKLGEVDRARAIYAHCSQICDPRVAPEFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMSAQMLSAAGQVSGTVADLAPGAKDGMRMLEAQAMAAATVG
AGGGGGVHGVEMDASSRAKPKATAAGGGNIMFVRGETTQEQGRDGKEANRVVNPDEIDID
DEDEESEGDEEEGGESGDERDLPVQQKAVPSEVFGGLLPSTAKDS
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccagttttgaagttccaggtgaaatagagatcgtttttgatgaagatgattta
gcttacgaggaggaaattctccgcaacccattctcagttaagcattggcttcggtacata
gagcacaagaaggatgctcctaaacaagtcatcaatataatttatgaacgcgcgctgaag
gaactcccgggaagctataagctttggtacaattaccttaagctacgtcgacggcagatc
aaaggacgttgcatcacagatccttcttatgaagatgttaataatgcctttgaaagggca
ttggtcttcatgcacaagatgcctcggatatggctggactactgtcagctccttgtggac
cagaagagagtcacccgaacacggcaggtgtttgatcgctctttgcgggcacttccggtg
acgcaacaccacagaatttggcctctctatctggaatttgtccgatcgcaccactcacat
gaaactgctgtgcgtgtgtttcgccgatatctgaagctctgtcctgaagattctgaggac
tacattgagtatttaatatcaattggacgacttgatgaagcagctgtaaagttggcgtca
atcgtcaaccgtgaggagtttgtgtctaagcacgggaaatccaaccatcagctgtggaat
gagctctgcgaacttatctccaaaaatccagacaaagttaggtccttatgtgtagatgca
atcataaggggtggcctccgtcgatacactgaccagttgggtcacctctggaattccttg
gccgattattatgttcgaagtggtttgtttgaacgagccagggacatctatgaggaagcc
atacaaacggtcacgactgtccgggattttactcaagtgtttgatgcgtatgctcagttc
gaggaacttagtctaactcgtcgcatggaagaagtttctgagaagcctatttccacagaa
gaagacgaagtggagttggagctgaggctggcgaggtttgagcacctcatggaaaggcga
ctgctcttgctcaactcagtcctgctccgccagaatccacacaatgtgcacgagtggcac
aagagggtgaagctgttccaagggaaacctcacgagatcataaacacttacactgaagct
gtgcagactgttgatcctcagttagctgtcggaaagcttcattcgttgtgggctgcattt
gcgcggttctacgaggacaatgggcaaattgaagacgcccgcatcgtcctcgagaaagcg
actcatgttacgtatcagaaagtggatgacttggcatccatttggtgtcagtgggcagaa
atggagatccgtaatgagaactatgaggaggcagttcgtctgatgcagagggcaacagct
ccccctccacggaaagttgcgtatcatgatgaaacagaaacagtgcaagcaaggttgtac
aaatctttgaaagtgtggtccatgtacgcagatctggaggagagctttggaaccttcaag
tcgtgtaaagctgtatatgaccgcatcattgatctgaagattgctactcctcagattatt
ataaattacggactgttcctggaagagcataaatactatgaagaagcattccgagcatac
gagaaaggcatcgcactctttaaatggccaaacgtgtacgatatttggaacacttacctc
accaagttcttgaaacgctatggtggaacgaagcttgagagggcccgtgatttatttgag
caatgcttggaacactgtcctgccaaatttgccaaagctctgtacctgctctatgcaaaa
ctagaagaggaacatggccttgctaggcatgcaatggcagtttatgaacgagcaaccaag
gctgtgctcccagaagagcaatttgagcttttcaacatttacataaagaaagctgccgaa
atttatggcgtggccagaactcgtcaaatatatgagcaggccatcgagatccttgcggag
gaacatgcgcgggagatgtgtgtgcggttcgcacagatggaaaccaagctgggggaagtg
gacagagctcgtgccatttacgcccactgctcacaaatatgtgatccaagggtggcacca
gagttttggcaaacgtggaaggagtttgaagttcgtcatggcaatgaagacacgatgagg
gaaatgctgaggataaagcgcagcgtgcaagcaacttacaacactcaggtgaacatgatg
tctgctcagatgctctctgcagctggtcaagtgtctggtacggtcgcagatttggcacct
ggagccaaggacggaatgaggatgctggaagcccaggcgatggcagccgccactgtcggt
gctggtggcggtggtggtgttcatggtgttgaaatggatgcttctagtcgagccaaacct
aaggccaccgcagctgggggtggtaacatcatgtttgtgcgtggcgagaccacccaggag
cagggcagagatgggaaggaagcgaaccgcgtggtcaacccagacgagatagacatagac
gacgaggacgaagagtctgaaggagacgaggaagagggaggagagtcaggcgatgaaaga
gatcttccagtgcagcagaaggcagttccatcggaagtatttggaggacttttacccagc
actgcaaaagatagttga
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