Iodobacter fluviatilis: C1H71_03280
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Entry
C1H71_03280 CDS
T06803
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ifl
Iodobacter fluviatilis
Brite
KEGG Orthology (KO) [BR:
ifl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifl03019
]
C1H71_03280 (hrpA)
Enzymes [BR:
ifl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C1H71_03280 (hrpA)
Messenger RNA biogenesis [BR:
ifl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C1H71_03280 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
T2SSE
NACHT
AAA_25
PhoH
CENP-X
AAA_23
ABC_tran
FtsK_SpoIIIE
NTPase_1
SRP54
Motif
Other DBs
NCBI-ProteinID:
QBC42674
UniProt:
A0A7G3G656
LinkDB
All DBs
Position
764911..768819
Genome browser
AA seq
1302 aa
AA seq
DB search
MTATGSASSPISEQNYLQQIADAQLTDRGNLERLLHRVNQRQAKQQPCDKELRELEAGIA
KSLAKSEQRRSRLPHPEFDENLPVNQRKDELSEAIAKHQVVIVCGETGSGKTTQLPKICL
ELGRGVHGLIGHTQPRRLAARSVATRIGQELKSENAVGFKVRFTDKTTDASYIKLMTDGI
LLAETLSDPYLLKYDTIIIDEAHERSLNIDFLLGYIKQLLPKRPELKVIVTSATIDADRF
SQHFAGAPVMEVSGRTFPVEVRYQPLHAIDEDDQELEMEEAIVQAIEGLWRTDGSGDVLV
FLPGEREIRETAEELRKAKLRDAEILPLFARLSNEDQQRIFRSTSTGRRIILGTNVAETS
LTVPGIRYVVDSGHARIKRYSPRAKVEQLLVEKISQASARQRSGRCGRVASGICVRLYDE
ADFNNRSEFTDPEIVRSSLAAVILRMAALKLGHIDNFPFLEAPSSRLVSDGYQQLRELGA
VDSEDQLTPIGKQLARLPVDPRIGRMLLAGRDEQCLAEILIIASALSAQDPRERPFDAKE
AATRAQAKFVEDKSDFLSFLRMWEFFSEALDNKTSNRQLINLCHEHFLSYLRLREWRDLH
RQLAEICQDMDLRLNETPGTPEQILKALMTGLLGNIGFKQPENDEYLGARGIKFNIFPGS
GLKKARPKWIIAAEIVETSKIYGRCVAAIEPEWVERIAGHLVNRHYFDPHWEKTSAQVNA
SERVTLYGLPIVPKRRVHFGKIDPVAAREIFIREALVRFNYNSRAKFFEHNKELILDVQD
LEHKARRQDVLVDDDALFAFFDAKIPADIVNGAGFEAWRKQIERDNPQHLFLSRDDLMQH
GADAVTEEQFPEFFRLNDAKLPLSYRFEPAHPLDGVTITLPLHLLNRVNHAIFDWLVPGM
IREKITLLIKSLPKSIRRICVPVPEFATKMLIALDQASRSEPLLPQLAQAVGRGAGLIVP
ADEFNPKDLPTHLQMNFRIVDDAGQELAQGRDLIALRAQLGEAAQMTFRDAADDSVSIEK
TGIIKWDFGELPAKINFKRQGRPITGFPGLVPEEDAVAIRLFDTEFAASIAHRSGVICLL
KFELKDHVKQLPKSLPTFNPLALQLRGVCNGDELMEDVVATICDRAFIGEDEPPRKPKDF
EGQKSRAKVRLPSVRDAVMRILAELTNEYVALNKLLAKPSPFANSMNELLGQLVFKGFLQ
QTPWEQLPRLPIYVKAMRIRAEKRVANPQRDGQRGAEINELYKRWEAEMLKWEKEGRDTA
PLAPFRWMIEELRVGLFAQELKTPYPVSVKRLSKVFEDLTRR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgacagccaccggcagcgcctctagtcctatttcagagcaaaactaccttcagcaaatt
gccgacgcgcaattaaccgacagaggcaatctggagcgcctgttgcaccgcgtcaaccag
cggcaagccaagcagcagccttgtgataaagaattgcgcgagctggaagcgggcattgcc
aaatcgctggccaaaagcgagcagcgcagaagccgcctgccccacccggaattcgatgaa
aacctgccggttaatcagcgtaaagacgagctatctgaggcgattgccaagcatcaggtg
gtgattgtgtgcggtgaaaccggctcgggtaaaaccacgcagttaccgaagatttgtctg
gagctgggccgtggcgtgcatggcttgattggccacacccaaccgcgccgccttgccgcc
agatcggtggcaacgcgcatcgggcaggaattaaaatctgaaaatgccgttggttttaag
gtgcgctttaccgataaaacgactgacgccagctatatcaagctgatgaccgacgggatt
ttgctggcggaaacgttatctgatccttatctcttaaaatacgacacgattattatcgac
gaggcgcacgagcgcagcctgaatatcgatttcttactcggctatatcaagcagctgctg
ccaaagcgccccgagctgaaagtgatcgttacctccgccaccatcgatgccgatcgcttt
agtcagcattttgctggtgcacctgtcatggaagtctctggccgcaccttcccggtggaa
gtgcgctatcagccattacacgccattgatgaagacgatcaagaactagaaatggaagaa
gccattgtgcaagccattgaaggcctatggcgtaccgatggtagtggtgatgtgctggtg
tttttgccaggcgagcgcgagattcgtgaaaccgccgaagagctgcgcaaagccaagcta
agagacgccgaaattctgccgctatttgcacggctttcaaacgaagatcagcagcggatt
ttccgctccactagcactggccgccgcattatcctgggcaccaacgtggccgaaacctcg
ctcaccgtaccgggcatccgctatgtggttgattctggccatgcgcggattaaacgctat
tcgccgcgcgccaaggtcgaacaattactggttgagaaaatatcccaagcctcagcccgc
cagcgctctgggcgttgcggccgggtggcttccggtatttgcgtgcgtctttatgatgaa
gctgactttaataaccgctctgaatttaccgatccagaaatcgttcgctcgtctttagct
gcggttatcttgcgtatggctgcgctaaaactgggccatatcgataactttcctttctta
gaagcgccatccagccgcttggtcagcgatggttatcagcagctgcgtgagctgggtgcg
gtggatagcgaagatcagcttacgcctatcggcaagcagctcgcccgcctgccggtcgac
ccacgcataggccgtatgctgctggctggccgcgatgaacaatgcttggcagaaatcctg
attattgcctcggcgctatcggcacaagatccgcgcgagcgcccttttgacgcaaaagaa
gccgctacccgcgcacaagctaagtttgtggaagataaatccgactttttatctttcctg
cgcatgtgggaattctttagcgaggcgctggataataaaaccagtaatcgtcagctgatt
aacctctgccacgagcactttttatcttatctacgcttacgtgaatggcgtgatctgcac
aggcagctggccgaaatttgccaagatatggatttaaggctgaacgaaacgccaggcacg
ccggagcaaatccttaaagccctgatgacaggcttactcggcaatatcggctttaaacag
ccggaaaacgacgaataccttggcgcgcgcgggattaaatttaatattttcccaggctct
ggcctgaaaaaagcacgccccaaatggattatcgccgccgagattgtggaaacatccaaa
atctatggccgctgcgtagctgccattgagccagagtgggtagagcgcattgctggccat
ctggttaaccgccattattttgatccgcactgggaaaaaacctcggctcaagtcaacgcc
agcgagcgcgttaccctgtatggcctgccaattgtgcccaaacgccgcgtgcattttggc
aagatcgatccagtggccgcacgggagatttttatccgcgaagcgctggtacgctttaac
tacaacagccgcgccaaattctttgagcacaataaagaactcattctggatgtgcaggat
ttagaacacaaagcccgccgtcaggatgtgctggtggatgatgacgcgctgtttgcattt
tttgacgcaaagattcccgcagatatcgtcaatggcgctggttttgaggcatggcgtaag
cagatcgagagggataatccgcagcatttattcttaagccgcgacgatttaatgcagcat
ggcgcagatgcggtgacggaagaacaattcccagaatttttccgcctgaacgacgcaaaa
ctgccgctctcttaccgctttgagcccgctcacccgctagatggcgtgaccattaccctg
cccttgcacctgttaaaccgcgtgaaccacgctatttttgactggctagtgccgggcatg
attcgcgaaaaaatcaccctactgattaagtctttgcctaaatctatccgccgtatttgt
gtgccggtgccagaatttgccaccaaaatgctgattgcgctggatcaggcttcgcgctct
gaacccttattaccgcaactggcgcaggccgtaggccgtggcgcggggctgatcgtgcca
gcggatgagtttaatcccaaggatttgccaacgcatctgcaaatgaacttcagaattgtg
gatgatgcagggcaagagctggctcaaggccgcgacctgatcgcactgcgcgcccagctg
ggcgaagccgcgcaaatgacttttcgcgatgccgccgatgatagcgttagcatcgaaaaa
accggcatcatcaaatgggattttggcgagctgcccgctaagatcaactttaagcgccaa
ggccgcccgattactggcttccccggccttgtgccggaagaagatgccgtggcgattcgc
ctatttgatacagaatttgcagcgagcatcgcacaccgcagtggcgtgatttgcttactt
aaatttgaactaaaagaccatgttaaacagctgcctaaatcactgccaaccttcaacccg
ctagcgctgcaattacgcggagtatgcaatggcgatgaattaatggaagacgtggtcgcc
accatttgcgaccgcgcctttattggtgaagatgagccaccacgtaagcccaaagacttt
gaagggcagaaatcgcgcgccaaagtgcgcctgccttcggtacgcgacgcggtcatgcgc
atcttggccgagctaaccaacgaatacgtggcgctcaataagctgctggccaaaccctcg
ccctttgccaacagcatgaacgagctgcttggccagctggttttcaaaggctttttgcag
caaacaccgtgggagcaattaccacgcttgcccatctatgtaaaagccatgcgcatccgc
gctgaaaaacgcgttgccaacccgcaaagagacggccagcgcggcgcagaaatcaacgag
ctgtataagcgctgggaagcagaaatgctcaaatgggaaaaagaaggccgcgacaccgcc
ccactcgccccatttcgctggatgatcgaagagctacgcgttgggctatttgcacaagag
ctaaaaacgccttatccagtatcggtgaagcgcttgagcaaggtatttgaggatttaaca
cggcgttaa
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