Iocasia fonsfrigidae: GM661_03325
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Entry
GM661_03325 CDS
T07718
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ifn
Iocasia fonsfrigidae
Pathway
ifn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM661_03325 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifn03019
]
GM661_03325 (rnr)
03016 Transfer RNA biogenesis [BR:
ifn03016
]
GM661_03325 (rnr)
Enzymes [BR:
ifn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GM661_03325 (rnr)
Messenger RNA biogenesis [BR:
ifn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM661_03325 (rnr)
Transfer RNA biogenesis [BR:
ifn03016
]
Prokaryotic type
tRNA degradation factors
GM661_03325 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
CTC1_2
OB_HELZ2
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QTL97077
UniProt:
A0A8A7KDV8
LinkDB
All DBs
Position
671716..673839
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AA seq
707 aa
AA seq
DB search
MSARERLLDFMKNKAYRPMTRAELFSHFNISKDEQRVMKRVLRSLEKEGLIYQNNKGCFG
LPEKMDLIAGRLQGNQKGFAFLIPDDPAKEDVFIGSSNMNGAMHNDKVFVRVLPHVKGKR
QEGEVVHIIEHANTRIVGNFERSKYFGFVVPDNKRIFYDLFIPREEINGAKQAQKVVAEV
TRWPDKKRNPEGKIVEILGFKEEAGVDIEAIIRQLDLPQGFPEGVIQELADISEVIDTAE
LENRHDLRGLSMFTIDGADAKDLDDAVSLEDLGRGRFRLGVHIADVSHYVREGSDLDKEA
LNRGTSIYLVDRVIPMLPPKLSNGICSLNPGEDRLTMSVFITYQLEPLKIINSEILPSII
RTNYRLTYREVNDILLNDDQELIAKYDNIIGQLRMMNELRSKIKRERFSSGSVNFDFPEA
RVILDEQGKPTAIEKRSHGTAEQLIEEFMIAANRVVAEEMSWREIPFIYRVHDRPDNDRL
LEFNEFIHNFGYHLKGVDNEIHPRALQDLLESVRDKPEERVINTMLLRSMKQAVYSPYNI
GHFGLSIEYYSHFTSPIRRYPDLMIHRIIKEVISKGQLSKKRIKSLEERLNTVAEHSSLQ
ERRAMEAERDSVELKKIEFMKDKIGREYEGIINGVTNFGLFVELDNTVEGLVHVENLKDD
YYHYNDKQHCLIGESTRKVYRFGDRVTVKVDKVNPDERELDFVLAED
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctagagaaagactgctagattttatgaaaaataaggcctataggccgatgact
agagctgagttgttttcacattttaatatttctaaagatgaacagagggttatgaaaagg
gttctcaggagtctggagaaagagggcttaatttatcagaataataaagggtgctttggt
ttacctgagaagatggaccttattgcagggcgtttgcagggtaatcagaagggttttgct
tttttaattcctgatgatccggctaaagaagatgtatttattggcagttctaatatgaat
ggggccatgcataatgataaagtatttgtccgggtcctgcctcatgtgaagggtaaaaga
caggagggtgaagttgttcatattattgaacacgccaatactagaattgtaggtaatttt
gagcgcagtaaatactttggttttgtggtacctgataataaaaggatattttatgatctt
tttattcccagagaagagataaatggagcaaaacaggcacaaaaagttgttgctgaagta
acaagatggcctgataaaaaaaggaaccctgagggtaaaatagttgaaattcttggtttt
aaagaagaagctggggttgatattgaggcaataatccgtcaattagacctgccacaggga
tttcctgaaggagtcattcaggagttggctgatatttctgaagtgatagatacagcagag
ctagaaaacagacatgatttaaggggtctgtcgatgtttactattgatggcgcagatgct
aaagaccttgatgatgctgtttcactggaggatttaggtagaggtaggtttcgtctaggg
gttcatattgccgatgtatcacactatgtcagagagggtagtgaccttgataaagaagcc
ttaaatcgcggtaccagtatctatttggtagacagggttatccccatgctgccaccaaaa
ctctctaatggtatctgtagtttaaatccaggggaagatagattgactatgtctgttttt
attacctatcaattagaaccccttaagataataaattcagagattttaccctctattatc
aggactaattataggttgacctacagagaggttaacgatatacttttaaatgatgatcaa
gaattaatagctaaatatgataatattatcggacaattaaggatgatgaatgaattacgc
agtaaaataaaaagggaacgttttagcagtggaagtgttaattttgatttccctgaggcc
agagtgattcttgatgaacagggaaaacctactgccattgaaaaaaggagtcatgggact
gcggaacagttaattgaggaatttatgatagcggctaacagggttgtagctgaagaaatg
tcctggagggagattccttttatttaccgggtacatgataggccggataatgaccgccta
cttgaatttaatgaatttatccataactttggatatcaccttaagggggtcgataatgag
atacacccccgggcattacaggaccttctggaaagtgtgagggataagcctgaggagagg
gtaataaatactatgttgctgcgctccatgaaacaggctgtttatagtccgtataatatt
ggtcattttggactgtcaatagagtattattcccattttacatcacctatcaggcgttac
cctgatctaatgatacatcgtattattaaagaggttatttctaaggggcagttatctaaa
aagaggattaaatccctggaagagagattaaatactgtagctgagcacagctcactacag
gagagaagggctatggaggctgagagggattctgtggaactgaaaaagatagagtttatg
aaagataaaataggccgggaatatgagggtattattaatggggttactaattttgggctt
tttgttgaactggataatactgttgaggggctggtacatgtagagaacctgaaagatgat
tattaccattataatgataaacagcactgtttgattggtgagtcaacacgaaaggtgtat
cgttttggtgatagggtaactgtcaaggtcgacaaggttaaccctgatgaaagggaactg
gattttgtcttggctgaagactaa
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