Iocasia fonsfrigidae: GM661_13510
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Entry
GM661_13510 CDS
T07718
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ifn
Iocasia fonsfrigidae
Pathway
ifn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM661_13510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifn03019
]
GM661_13510
03009 Ribosome biogenesis [BR:
ifn03009
]
GM661_13510
Enzymes [BR:
ifn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM661_13510
Messenger RNA biogenesis [BR:
ifn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM661_13510
Ribosome biogenesis [BR:
ifn03009
]
Prokaryotic type
rRNA helicases
GM661_13510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTL98906
UniProt:
A0A8A7KAU7
LinkDB
All DBs
Position
complement(2804860..2806443)
Genome browser
AA seq
527 aa
AA seq
DB search
MKKIKFEELKISRDVLKAIEDMGFEETTPIQTNAIPPALEGRDIIGQAQTGTGKTAAFGI
PLLERVDPDNKNPQAIILCPTRELAIQVAEELKRLARYKRNLHTLPVYGGQSIKRQIKVL
KKGVQVIIGTPGRVMDHMRRGTLQLSGIDFLVLDEADVMLDMGFIDDIEKILEDIPQDRQ
TLFFSATIPKTIINLGKRYQKDAKLIRIAHENLTAPSIEQYYYEIKRGDKLKVLTRLIDM
HLPQLSLIFCNTRKQVDELNIQLQARGYLADALHGGMNQNQRDRVMDKFRNGIIEHLVAT
DVAARGIDVDNVEAVFNYDLPQDTDYYVHRIGRTGRAGKTGTAYTFVVGKDIYKLRDIQK
YTKIKIERQNIPSLNDIEEVQIEKFVSSLKKYIEKEHLGKHTKIIEGLLEDDYTAIELAA
GLLKMSLTDEKEEENDYRDNFGDTGAEPGMVRLFINIGKKDKISPRHIVGAIAGETDLEG
KLIGAIDVYNNFTFVEVPSEMGAHVLNIMKDNYIKGNKVNVEPAKPK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaattaaatttgaagaactaaagatatccagggatgtattaaaggcaatagaa
gacatgggatttgaagaaactacccccatacaaacaaatgctattccgccagcactagag
ggcagagatattataggacaggcgcaaacaggaacaggaaagacagcagcttttgggata
cccttattagaaagggttgacccagataataaaaatccacaggcgattatattatgtcct
accagggaattagcaattcaggttgctgaagaattaaagagattggccagatacaaacgg
aatttacatactctacctgtttatggtggacaatctattaaaagacagatcaaggtctta
aaaaagggagtacaggttattattggtacacctggtagggtgatggatcatatgcgaagg
ggtacattacagttatctggtatcgattttcttgtattagatgaagccgatgtgatgcta
gatatgggctttattgatgatattgaaaaaatattagaggatattccacaggataggcag
actttatttttttctgctacaatacctaaaacaataattaatctgggtaaaaggtatcaa
aaggatgcaaaattaataagaatagctcacgaaaatttaacagcacctagtattgaacaa
tattattatgagattaaaaggggagataaactaaaggttttaacacgtttaattgatatg
cacctccctcagttatccttgattttttgtaatacaaggaaacaggttgatgaattgaat
atacagcttcaggccaggggatatcttgcagatgctttacacggtggtatgaatcaaaac
cagcgagatcgggtaatggataaatttaggaatggtattatagagcatttagttgctaca
gatgtagcagcccgtggtattgatgtagataatgtggaagctgtttttaactatgacctt
cctcaggatactgattattatgtccatagaattggcaggacaggtcgagcgggtaagacg
ggtaccgcctatacctttgttgtcggtaaagatatctataaactgcgtgatatacaaaaa
tatactaagataaaaattgagcgccaaaatataccttcacttaatgatatagaagaagta
cagattgaaaaatttgttagtagtttaaaaaaatatatagaaaaagaacatttaggaaaa
cataccaaaattattgaaggtttgcttgaagatgattatacagcaatagaacttgcagct
ggattactaaaaatgtctttaacagatgaaaaagaagaagagaatgattatagagataat
tttggggatactggtgcagaaccaggtatggtcaggttgtttattaatataggtaagaag
gataagatcagtcctagacatattgtgggggcaattgccggggaaacagatctggaagga
aaactaataggggctattgatgtttataataactttacttttgttgaagtccccagtgaa
atgggtgcccatgtcttaaatattatgaaggataattatattaagggaaataaggtgaat
gttgaaccagctaaacctaaatag
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