Iocasia fonsfrigidae: GM661_14065
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Entry
GM661_14065 CDS
T07718
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ifn
Iocasia fonsfrigidae
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ifn03009
]
GM661_14065 (rlmD)
Enzymes [BR:
ifn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GM661_14065 (rlmD)
Ribosome biogenesis [BR:
ifn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GM661_14065 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Cons_hypoth95
Methyltransf_25
MTS
PrmA
FtsJ
Methyltransf_11
Methyltrans_SAM
TRM5-TYW2_MTfase
N6_N4_Mtase
S1CSD-TOTE-1
Methyltransf_4
Methyltransf_12
DUF6051
Motif
Other DBs
NCBI-ProteinID:
QTL99005
UniProt:
A0A8A7KFY8
LinkDB
All DBs
Position
complement(2920644..2922023)
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AA seq
459 aa
AA seq
DB search
MTTELKKGDIVEIELDNLAHGGECVGHFADGLAVFVPGGIPGERVKIRITVKKKNYARGE
LLKVLQPVETRTEPVCSVADGCGGCQLQHVDYQEQLLHKKQMVIDLLKRIGGFENIKVNE
PIGVDYPFNYRNKAQFPLTKTEDKKIATGFYKKGSHNVVVNESCIIQHPLINRIVARTLA
VLNDYEMSVYNERTHRGLLRHLVIRTGVCTNQALLTIVTSRKTFKDGKEIASKLLQQIPE
LVGVIQNINREKTNVIMGGKNIILAGQDYYLDFIGNVRFKISPFSFFQVNTLQTRKLYDI
VKKYANLAGKETVLDAYCGIGSIALYLADGAKKIIGIEVVVMAIEDARENARLNNIDNCQ
FITGRVEEILPRLVKDGLKPDLVVFDPPRKGLDERVIKVINKIQPARIIYVSCNPATLSR
DLARMKENYEIKAIQPVDMFPQTYHVETVVSLQLKEGIL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgactactgaattaaaaaaaggtgatattgttgaaatagagcttgataatcttgctcat
ggtggtgagtgtgtcgggcattttgctgatggattagctgtttttgttcctggcgggatt
cctggagagcgggttaaaataagaattactgttaaaaagaaaaactatgccaggggtgag
ttattgaaagttttacaacctgttgagaccaggactgaaccagtatgctctgtggctgat
ggctgtggaggatgtcagctgcagcatgtagattatcaagaacaattattacataaaaaa
caaatggttattgatttattaaaaagaatcggtggctttgaaaatataaaagtcaatgag
cctattggagtagactatccttttaattatcgcaataaagcccaatttccactgactaaa
actgaagacaaaaaaattgcaacaggtttttataaaaagggcagccataatgtggttgta
aatgaaagttgtataattcagcatcccctgataaacaggattgttgccagaacacttgct
gtgttaaatgattatgaaatgagtgtctacaatgaaaggactcaccgtggtttattaagg
catttggtgattagaacaggagtctgtaccaaccaggcacttttaacaattgtaaccagt
aggaagacgtttaaggatggcaaagagattgccagcaagctattacagcaaattccggaa
ctggtgggagtaatccagaatattaaccgggaaaaaaccaatgtaattatgggcggtaaa
aatattatactggcaggtcaggattattatctagactttattgggaatgtacgattcaaa
atctcaccattttctttttttcaggtaaatacactacaaaccaggaagttatatgacatt
gttaaaaaatacgctaatttggccggtaaggaaacagtccttgatgcttactgtggtatt
gggagtatcgcattatacctggctgatggtgccaaaaaaataattggaattgaagtggta
gtaatggccattgaggatgccagagaaaatgcccgtttaaataatattgataactgtcaa
ttcataaccggcagggtagaagaaatactccccagactggtcaaagacggcttaaagcct
gatctggtggtttttgaccctcccagaaaaggccttgatgaaagagtgattaaggttatc
aataaaatacaacctgccaggattatttatgtttcctgtaatcctgcaaccctgagtaga
gatctggctaggatgaaggaaaattatgagataaaagctatccagccggtagacatgttt
cctcagacttatcatgtggaaacagtggtatctttgcagctaaaagaaggtattttatga
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