Isorropodon fossajaponicum endosymbiont: CVFO_0109
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Entry
CVFO_0109 CDS
T07680
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ifo
Isorropodon fossajaponicum endosymbiont
Pathway
ifo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVFO_0109 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifo03400
]
CVFO_0109 (mfd)
Enzymes [BR:
ifo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVFO_0109 (mfd)
DNA repair and recombination proteins [BR:
ifo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVFO_0109 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
UB2H
DUF924
Motif
Other DBs
NCBI-ProteinID:
BBB23463
UniProt:
A0A7R6NYE9
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All DBs
Position
104536..107961
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AA seq
1141 aa
AA seq
DB search
MLYLYPDKLKCFQSGQKTYWGSLYGSADALALIEFANQQQQVILVIANDITHFDSLYKSL
NFYNTDLEILKFDNWEVLAYDHFSPHPDITSSRLAALSKLKSLKRGIVITTLESLFSRLC
PLEFVEKYSFNIDINDNINIEAFSEKLLKIGYNRVTTVMGHGEFNIRGSLIDLYPMGAKT
PYRIDLFGQEVESIRTFDTSTQRSKVQVPEIVLLPTREFATDNTSIERFKTNYQKAFNDN
GFIYTEVSEGRLPGGIEFYLPLFFNTTNTLFDYLVDNTIIVISKGFSDLVDKTYSEIRER
FERAKKSLDRAPLDIPQVFLSKELLFSEIKKKPQLIISTSKLEDKNQHFNFNSSLLPPIR
IEPQTKNPLSKFSAFVKRFTNKKILVVCESRGRQDVLSDLFTSHQLDTHSVKNWREFNKS
SKLLNITHENLAHGLLTSDIAIVTEEDLFGQEVVQQQRRRANHKDFDEAIKSLVEIKMGD
AIVHENYGVGRYLGLKTQTFDGQSQDFLALEYANNAKLMVPITSLNLISRYAGISDSAPL
HKLGTNQWSKAKKKAGEALFDVAAELLEIYAKRASQTGFAFPKPNDAYSSFVASFPFEET
PDQLKTMGEVLADMQSHRPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAILVPTTLLS
NQHHQSFIDRFANHPVEIAALSRFQTPKEQKLIIEKLNQGTIDIVIGTHKIIQGTIKYKN
LGLIIIDEEHRFGVKQKEALKKLRGESDILTMTATPIPRTLNMALGSLRELSIIATPPAK
RSAIQTFVQEWNDNNIKEAITREMHRGGQVFVLHNDIDSIDNMAENLKQIMPKVHVRIAH
GQIPTRELERIMSDFYHARFQILVCTTIIETGIDIPNANTIIINNAQNFGLAQLHQLRGR
VGRSHHRAYAYLIIKSHQSLSKTAKKRLDTIESLEGLGAGFMLANHDLEIRGAGDLLGDN
QSGKISEIGFNLYHDLLKRTIDAMRSGRKINLDDPINHEVQIDSGLPSIIPEAYIFDVHE
RLVLYKRIASCQNNKELKALQIEMIDRFGLLPDSTKNLFANTKLKLFSKKIGIDKINLYE
NKAIITFGNKNTIEPIKIINLIQKQAKKYQLKGQNQLIVKQEMPEDIRRIELIENLLKTL
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgttatatctctatcctgataagcttaaatgctttcaatcaggtcaaaaaacttattgg
ggctcactatacggcagtgcagatgcactggcattaattgaatttgccaatcaacaacag
caagttattttagtcattgctaatgacatcacacattttgacagtctttataaatcttta
aacttctacaacacagacttagaaattttaaaatttgataactgggaagtgctcgcctat
gatcacttttcgcctcatcctgatatcacctccagtcgattagcagccctatcaaaactt
aaaagtcttaaacgtggtattgttatcaccacattagaatcattattctcacgtctatgc
ccgttagagtttgtagaaaaatacagcttcaatatcgatattaatgacaacattaatatt
gaagcctttagtgaaaaactactaaaaattggctacaaccgtgtaaccaccgtcatgggg
catggtgagtttaatattcgtggctcattgattgatttataccccatgggcgcaaaaaca
ccttaccgaattgatttgtttggccaagaagtggagtctattcgcacctttgatacctca
actcaacgctctaaagtacaagtgcctgaaattgtgctactgcctactagagaatttgcc
acagataataccagtattgagcgctttaaaactaattatcaaaaagcatttaatgacaat
ggctttatctataccgaagttagtgaaggtaggctgccaggtggcattgaattttattta
ccgctgttttttaacacaaccaacaccttgtttgattatctagtggataacactattatt
gtcatatcaaaaggattttcagacttggtggataagacctatagcgagatacgtgaacga
tttgagcgtgctaaaaaatcattagatagagcaccccttgatattccccaagttttcctg
tccaaagaattgctgtttagtgaaattaagaaaaaaccacagctcatcatcagtacatca
aaactagaagataaaaaccaacactttaatttcaactcaagcttattacccccaatacgc
attgaaccacaaacgaaaaacccattaagcaaattttcagcttttgttaaaagatttacc
aacaaaaaaatattagttgtttgtgaatcgcgtggcaggcaagatgtgctcagcgatttg
ttcaccagccatcaacttgatacccatagcgttaaaaactggcgtgaatttaataagagc
agcaaactgctcaatattacccatgaaaatcttgcccatggcttgctcactagtgatatt
gccattgttactgaagaagatttattcggtcaagaagtggttcagcaacagcgtcgtcgt
gctaatcacaaagattttgatgaagcaattaaaagcctagttgaaattaaaatgggtgat
gcgattgtgcatgaaaactatggtgtgggtaggtatttagggcttaaaacccaaactttt
gatggacaatcacaagatttccttgccctagaatatgctaataacgcaaagttgatggta
ccaatcacctcgcttaatctaatctccagatatgctggtatttcagatagtgcaccatta
cacaaactaggcacaaatcaatggagcaaggctaagaaaaaagcaggtgaagctttgttt
gacgtggcagctgaattattagaaatttatgccaaacgagcctctcaaacaggttttgct
ttccctaagccgaatgatgcttattcctcatttgttgccagctttccctttgaggaaaca
ccagaccaactaaaaaccatgggcgaagtcttagcagatatgcaatcacacagaccaatg
gacagattagtctgtggcgatgttggttttggcaaaactgaaattgccatgcgtgcggca
tttttagcagttgaagcaggaaagcaagtggcaattttggtaccaaccacgctattatct
aaccagcaccatcaatcgtttattgaccgttttgccaaccaccctgttgaaattgcagcg
ctttcaaggtttcaaaccccaaaagagcaaaaactaattattgaaaaattaaaccaagga
acaattgacattgtcattggcacgcacaaaattattcaaggcactattaaatacaaaaac
cttggcttaattattattgacgaagaacatcgcttcggcgttaaacaaaaagaggcgttg
aaaaaactacggggtgaaagtgacattctgaccatgactgccacccctattccgcgcaca
ttaaatatggcgctaggctcattaagagaattgtccattattgccacgccacctgccaaa
cgcagcgccatccaaacgtttgtacaagagtggaatgacaacaacatcaaagaggcaatc
acacgtgaaatgcaccgtggtggtcaggtgtttgtactacacaacgatattgattcaatt
gacaatatggcagaaaatctcaaacaaattatgccaaaagttcacgttcgcatcgcccac
ggacaaataccaacacgtgaactagaaagaatcatgagtgatttttatcacgcacgtttc
caaattttggtttgcaccacgattatcgaaacagggattgacattcccaatgctaatacc
atcattattaataatgcacaaaattttggtttggcacaactacaccaactacgaggccgt
gttggtcgctcccaccatagagcttatgcctatttaattattaaatcccatcaatcgtta
tctaaaacagccaaaaaacgccttgataccattgagtctttagaggggcttggtgctgga
tttatgctggctaatcacgaccttgaaattcgtggtgcgggtgatttattgggtgataat
caatctggaaaaattagcgaaattggctttaatctttatcatgatttattaaaacgcact
attgatgccatgcgctctggtagaaaaattaaccttgatgaccccatcaatcatgaagta
caaattgattctggcttgccatctatcattccagaggcatatatttttgacgtacacgaa
cgacttgtactctacaagcgtattgccagttgtcaaaacaataaagaacttaaagctcta
cagattgagatgattgaccgctttggattattaccagattcaaccaaaaatttatttgcc
aataccaaacttaagctcttttcaaaaaaaattggcattgataaaattaacctttatgaa
aacaaagccattatcacctttggtaataagaataccattgagccgataaaaatcatcaac
cttattcaaaaacaagcaaaaaaatatcagctaaagggtcaaaatcaattaattgttaaa
caggagatgcctgaagatattagacgaattgaattgatagaaaatctactaaaaacatta
aattag
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