Isorropodon fossajaponicum endosymbiont: CVFO_1271
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Entry
CVFO_1271 CDS
T07680
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ifo
Isorropodon fossajaponicum endosymbiont
Pathway
ifo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVFO_1271 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifo03019
]
CVFO_1271 (rhlE)
Enzymes [BR:
ifo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVFO_1271 (rhlE)
Messenger RNA biogenesis [BR:
ifo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVFO_1271 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
UvrD-helicase
CMS1
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BBB24357
UniProt:
A0A7R6PDI7
LinkDB
All DBs
Position
complement(1171597..1172910)
Genome browser
AA seq
437 aa
AA seq
DB search
MGFSKLGLSDSILKAIEQQGYSEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL
EILSKGNPTKSNQVRTLILTPTRELAAQVSDSVATYGKHLSLKSSVVFGGVKINPQMRKL
RGGVDILVATPGRLLDLYSQNAVKFDTLEIVVFDEADRMLDMGFIHDIKRILKILPPEKQ
TLMFSATFSNDIRTLAKGLVNNPVEISVTPRNSTVKAVKQWIHPVDKSKKQALLTHLIQE
HSWYQVLVFSRTKHGANRIATQLEKKKISATAIHGNKSQGARTRALADFKNAKVNVLVAT
DIAARGIDIDQLPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSTDEAKQLFDIER
LIQNKLDRVMVEGFVPEHNLPESGKKILPPKTKKPKKNKSRNKPRYGKNSNSQENKPNNK
KGFWGSKPNKKSTRKTT
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttcaaaattaggcttgtctgattcaattcttaaagccatcgagcaacaagga
tacagcgagccatcaccaatacaagctcaagctattccagctattttagaaggtaaagat
gttatggccgctgcccaaactggcacgggtaaaacagcaggattcacgctacctattctt
gaaatattatcaaaaggtaatcctacaaaatccaatcaggttcgtacgctaatcctaacc
cctacgcgtgaattagccgcacaagtcagcgatagtgtagcgacttatggtaagcatttg
tcgcttaaatcaagtgtggtgtttggcggcgtaaagattaatccacaaatgcgaaagttg
cgtggtggtgttgatatcttagtcgccacaccagggcgattattagatttatattctcaa
aatgcagtgaaatttgacacgctagagattgttgtatttgacgaggcagatagaatgtta
gatatgggatttattcatgatattaagcgaattttaaagatcctaccaccagaaaagcaa
acactcatgttttcagccactttttctaatgacattcgaacactggcaaagggtttagtt
aacaaccctgtagaaatatcagtcacccctagaaattccaccgttaaagcggtaaagcag
tggattcatcctgttgataaatccaaaaaacaagcactactcacacaccttattcaagaa
catagctggtatcaggtgctggtatttagccgtactaagcatggtgcaaatcgcattgcc
actcaattagaaaagaaaaaaattagtgcaactgccattcatggtaacaaaagtcaaggt
gctcgtacaagagccttggcagattttaaaaatgccaaagtgaacgtgttagtggcaact
gatattgctgcaaggggcattgatattgaccaattgccacatgtcgttaactttgacctg
ccacatgtgccagaagattatgtacatcgtattggtcgtacgggtcgtgctggttcaaaa
ggcgaggcaatttcattagttagtactgatgaagctaagcaattatttgatattgaacgc
ctcattcaaaataaattagaccgtgtaatggtagaaggatttgtgccagagcacaatttg
ccagaatcgggcaagaaaatcttaccgccaaaaaccaaaaaaccaaaaaaaaataagagc
cgtaataagcctagatacggcaaaaatagcaattctcaagaaaataaaccaaacaataaa
aaaggtttttggggtagtaagcccaataaaaaatctacaaggaaaacaacatga
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