Ictalurus furcatus (blue catfish): 128599159
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Entry
128599159 CDS
T09387
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128599159 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128599159 (ddx5)
03009 Ribosome biogenesis [BR:
ifu03009
]
128599159 (ddx5)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128599159 (ddx5)
Spliceosome [BR:
ifu03041
]
Complex A
U1 snRNP components
U1 related factors
128599159 (ddx5)
Complex B
128599159 (ddx5)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Pre-60S particles
Helicases
128599159 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
128599159
NCBI-ProteinID:
XP_053466586
LinkDB
All DBs
Position
2:25157905..25164090
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AA seq
625 aa
AA seq
DB search
MPGYSDRDRSRDRGGYGNNYSSGPPRFGGSRGGPPAGKKFGSPGDRLRKKHWNLDELPKF
EKNFYQEHPDIAHRSSQEVEQYRRSKEITVKGRDCPKPTIRFHEANFPSYVMDVINKQNW
TDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAVDYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQANDLVSVLREANQAINPKLIQM
AEDRGGRSRGGRGGGYRDDRRDRYSGGRRDYNYNQDSHSNDRSYDNGPKKPFSNKTQNGA
AYSNGSGSYNENSNNGFNGAYNGQSNFNGSQAGNFGSQGFQNKQFSANQGAAPNGANHNA
QFPFNSQQQPMQPMMPFSMPPPNFQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcccggttattccgacagagaccgcagccgcgacagaggtggttatggcaacaattac
agcagcgggcctccgcggtttggagggagtcgaggtggtccacctgccgggaagaagttt
ggcagtccaggagacagactgcggaagaaacactggaacctggacgagctgcccaaattc
gagaagaacttctaccaagagcacccggatatagcgcacaggtcatcgcaagaggttgaa
cagtacaggaggagcaaagagatcacagtcaaaggcagagactgtcccaaacctacaatt
aggtttcatgaggcaaactttccctcatacgtcatggacgtgatcaataaacagaactgg
actgatccaactccgatccaagctcaggggtggccactggcactaagtggcaaagatatg
gttggcattgcccagactggatctgggaaaacactctcgtatttgcttcctgctattgtg
cacataaaccaccaacccttccttgagcgtggagatggaccaatttgcctggtgttggct
cccactcgtgagttagcgcagcaagtccagcaggtcgcagtagactatggcaaagcttct
cgcctgaagtccacctgcatctatggaggagctcctaaaggaccacagattcgtgaccta
gagagaggagttgagatctgcattgctactcctgggaggcttattgacttcctggaagct
ggaaagacaaatctgcgccggtgcacatatctggtgctggacgaggctgatagaatgctg
gatatgggctttgaacctcaaatccgtaaaattgttgaccagatcaggccggacaggcag
actctgatgtggagtgctacctggcctaaagaggtgcgtcagctggctgaggacttcttg
aaagattatgtccagatcaatgtgggagcgctacagctcagtgccaaccacaacatcctg
cagatagtggatgtatgcaatgatggagagaaggaggataagttgctgcgcctgctagag
gagatcatgagcgagaaggagaacaagactatcatctttgtggagactaagaggaggtgt
gatgacctcacaaggaggatgcgtagggacgggtggcctgcaatgggtatacatggagac
aaaagtcagcaggagagagactgggtgctcaatgaattcaagtttggcaaagcacccatt
ctcattgctactgatgtggcatcaagaggtctagatgttgaggatgtcaagtttgtaatt
aatttcgattatcccaacaactctgaggactacatccaccgaattggccgcacagcacgt
agccagaaaaccggaacagcctacaccttcttcacgcctaacaactttaagcaggcgaat
gaccttgtctctgtcctccgtgaagccaaccaggccatcaatcccaaactcatccagatg
gcagaagacagaggaggtcgttcaaggggcggtcgaggtggcgggtatagagacgatcgc
cgagatcgttactccggaggcagacgggactataattacaaccaagacagtcacagcaat
gatcgcagttacgacaacggaccaaagaaacccttcagtaacaagacacagaatggggca
gcgtacagtaatgggagtggcagttacaatgaaaacagcaataatggctttaatggggct
tacaatggacagtccaactttaatggcagtcaggctggtaactttggaagccagggtttc
cagaacaagcagtttagtgccaaccagggagctgctccaaatggtgcaaatcacaacgca
cagtttcccttcaactctcagcagcaaccaatgcagcccatgatgcccttttccatgccc
cctcctaactttcaatag
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