Ictalurus furcatus (blue catfish): 128599383
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Entry
128599383 CDS
T09387
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128599383 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128599383 (pan3)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128599383 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
128599383 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
128599383
NCBI-ProteinID:
XP_053466888
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Position
23:complement(5036067..5060427)
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AA seq
804 aa
AA seq
DB search
MNSGLPVSAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDDCQFLHEDPSAGSVVHGGGSSG
SPVTLALAGGAVSSAAAAVAGYTLSGNAVAPCPSGAPAGVAKKSDALGPAGAALDGQLLS
IAGMDGGALSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSPSLLNDGAKNF
SHSAHDPVSSPTSSLFSDFGALSITQRRKAPNPAATEFIPKGAPRMSTMSQAAVPTFPSP
LFPHPGLSGSAAAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMVPTT
VSEQGGAAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPQTAPHVAYMQPKANAPS
FFMADELRQELINRHLITMAQIDQSENSGVPSEVDSYHSLFPLEPLLPPNRLQKTSNFSY
ITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGD
HSLVFSYDFHAGAETMYSRHFNDPTADSYFTKRKWGPHEPPPPRQHAGLLPESLIWAYIV
QLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQ
QADLISLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVN
DIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWS
ETGDRYLLKLFRDHLFHQVTEAGTPWVDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVV
TYSDLKRCFDSTFQELLAAANGSL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtggactcccggtctcggctgctccgctcggcggtgtcggaataccgggcgtc
aaggtgaaattctgtcgttattacgcgaaagacaagacttgcttttatggcgacgattgc
cagttcttgcacgaggatccgtccgcggggagtgttgtgcacggcggaggaagcagcggc
agtccggtgactttagccctcgccggcggagcagtgagctccgcggcggcggctgtagca
gggtatacgctctctgggaacgcagtagcgccgtgtccgagcggagctccggcgggtgtg
gccaaaaagagtgatgctctcgggcctgcaggagcggctctggacggccagttattgagc
atcgctggtatggatggcggagcgctcagtgatgcaaacctgaccaactcctatttcagc
agcagttttattggagtcaatggctttggaagtccagcagagtccaaatactcaatgatg
cagaggatgaccagcagcagcagctccccgagtctccttaatgacggtgccaagaatttc
agccacagcgctcatgatcctgtaagttcccccacttcgtccctgtttagcgactttggt
gctttgagcataacgcagaggaggaaggctcctaaccccgctgccacagagttcatccct
aaaggagcaccacgcatgtccactatgtcccaggcggccgtaccgacatttccctcgccg
ctattcccccatcccggtctgagcggctcagccgcagcaggactcgcgcctggtatgtct
ttgtctgctgggtcgtctcctctccactcgcccaaaatcactccccacacctcacccgcc
ccccggcgccgtagccacacccctaaccccaacccagccaattacatggtgcccaccacg
gtgtcggagcaaggaggcgccgcccacatcattcagaaggagaccgttggaggaaccacc
tacttttacaccgacaacacccctgctcccatggctggaatggtgtttccaacgtaccat
atctacccacaaacagcacctcatgtggcgtacatgcagcccaaagccaacgctccgtcc
ttctttatggctgatgagctcagacaggagttgattaacaggcatttgataacgatggcc
caaatcgatcagtctgagaactcgggagtcccatctgaggtggacagctaccatagcctc
tttcccctggagcctcttctgcccccaaaccgtctccagaaaaccagcaacttcagttac
atcacttcctgttacaaggcggtcaacagcaaagatgacctgccgtactgtctcaggagg
atacatggcttcaggctggtgaacaccaagtgcatgatgctggtcgacatgtggaagaag
atccagcactccaatgctgtcacgctgcgggaagtctttaccaccaaggcttttggagat
cactcgttggtgttctcttacgacttccacgccggtgctgagaccatgtacagcaggcac
ttcaacgacccgacggctgactcttatttcaccaagaggaagtggggtccgcatgagccg
cctcctcctcggcagcatgccggtctgctgcccgagtctctgatctgggcctacatcgtg
cagctgagctcagccctacgtaccatccacactgcaggcctggcctgtagggtcatggac
cccagcaagatcctcatcactggaaagactcggttacgggtgaactgtgtaggtgtgttt
gatgtcttaacatttgacaatagtcagaccaaccacttggccctcatgccccagtaccag
caagcagatctgatctctctggggaaggtggtgttggcactggcctgcaactctctggct
ggcattcagagagagaacctgcagaaagccatggagcttgtgtccatcaactactcatcc
gacctcaagaacctcatcctgtacctgcttacggagcaaagtcgcctgcgtagcgtcaat
gacatcatgcccatgatcggagccaggttttacactcaactggatgcttcacagatgagg
aatgacgtcattgaggaagatctggccaaggaggtgcagaacggacgcttgttccgtctt
ctggccaaactgggaaccatcaacgagagaccagaattccagaaggatccgacgtggtcc
gaaacaggggatcgctacctgctgaagctcttcagagatcacctgttccaccaggtgact
gaagcaggcacgccctgggtcgacctgagccacattgtgtcttgtcttaataaactggat
gccggagtgcccgagaagatcagcctggtgtctcgggatgagaagagcgtgctggtggtg
acctactcagacctaaagcgctgctttgacagcaccttccaggaactgctggctgccgct
aacggctcgctgtag
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