Ictalurus furcatus (blue catfish): 128599506
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Entry
128599506 CDS
T09387
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128599506 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128599506 (smg5)
03032 DNA replication proteins [BR:
ifu03032
]
128599506 (smg5)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128599506 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
128599506 (smg5)
DNA replication proteins [BR:
ifu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128599506 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
128599506
NCBI-ProteinID:
XP_053467128
LinkDB
All DBs
Position
23:complement(19608925..19629569)
Genome browser
AA seq
1094 aa
AA seq
DB search
MSGPGQDSEPEAKILHIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVSPTIGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
VIDTELTALCQSVLEDFNLVLFYQPTPSPGSQSVSEEEDEHDQACSVLPDSLVFKMVVIC
LMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEQGESDVPPLRTDAADDAD
PREQTNTLPSEDRPLQNGSIEEEDGDDENDEDESKGDDAAVSKKGSAKKSGEEKPKQKRK
YSRLSMLRRRRCARDEDESDLSEGFESDEEEDEEPQRTDGSGVPANSSLGKEGRRDAAGE
QGVWESGSEEEEEEGGTAFDVETDSDMNSQESRSDLEDIEDASSPAQEQRHEEEEEEEEE
EEEEEKKERPSCDEGSTPHATNGPLLSSDPIISSNLQAMSSQLFQAKRCFRLAPTFSNVL
LRPSHGSNVASDSVPSQESTPPPGDTTSNKSPELANGTNDDDVDTEDSEHSNQSYHSEKT
LSERLGILTNQGLIQVVKVFVDWMRTNTDIILMCAQSSQSLWNRLSVLLNLLPDGKKVLD
AGLGLMDEVEDLLARSERPDLVQTVLLPEDQALRHLPALNLAHRRLDFTHHRASLSPLQE
CVVRLCCIRSFGHFLTGLQGNVLHYNPEAGIFTSISQSEQENMVQQAKAQFRMAEEEARR
NRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTGALCQHLNLLRQLAASGCFI
IIIPRTVIDGLDVLKKENPGARDSIRFLESEFRKGNRYIRCQKESGRSFDRDKLKRQDVE
AWHLYKMVDSCRQLTGAQGGDEDTAGMVTILTGYEVEELADRSAPMKSAIQAVATAGMEL
KNIVKFYRQWKEMG
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggacaagacagcgagccagaggccaaaatccttcacatcaagcggctg
tacagggccgtggtggaatccgtacacaagctggacgtgatcatcggcagcaagtcgtcc
tacagggaggtcttcaagccggagaacatcagcctgaggaacaaactgcgtgagctgtgt
gtaaagctgatgttcttgcacccggtggattacggccgcaaggcggaggagctgctctgg
aggaaggtctactacgaggtcattcaagtcatcaagaccaacaagaagcacattcacagc
cgcagtgctctggagtgcgcctacaggactcacctgatcgctggagtcggattctaccag
cacctcctgctctacatccagtcccactaccagctggagctgcaggactgcatcgactgg
acgcacgtcaccgacccgctcatcggtcgtaagaagcctgtgtctgccacgcctaaggag
atggagtgggcacagatggcatgtcatcgatgtctcgtgtacctgggtgacctcgcgcgg
tatcagaacgagctggcaggtgtggaggccgagcagctggctgagcgattttaccaccag
gccctgtccgtctcgccaaccattggaatgccttttaatcagctaggtactctggctgga
agtaaattttataacgtagaagctacgtactattacctgcgctgcattcagtccgagacg
cccttcgagggagcctacgggaacctgaagcgtctgtttgataaagcggccaagatgtac
catcaggtgaagaaacaagagatgaagaagctctcaccgtcacgccagagatcaaaggac
atcaagcgactcctcgtaagcttcatgtacctccaaagtttactgcagcccaagaacagc
gtgatcgacacggaactgacggcgctgtgccagtcagtcctggaggactttaacctggtg
ctgttctaccagcccacgccgagtcccggcagccagtccgtcagcgaggaggaagacgag
cacgatcaggcctgcagcgtgctgcccgacagcctggtcttcaaaatggtggtgatctgc
cttatggtggtgcacagcttaaagagaggaggttcgaagcagtacagcgcctccatcgcc
ttcacgctagcacttttctcccatctggtgaaccacgtgaacatccggctacaagccgag
ctcgaacaaggggagagcgacgtcccgccgctacgcaccgacgccgcggatgacgctgat
cctagagagcagacgaacacacttccttcagaggacagaccgctgcagaacggctctata
gaggaagaagacggagacgacgagaacgacgaagacgagtcgaaaggcgacgacgcggcg
gtttctaagaaaggctcggcgaagaagagcggcgaggagaagccgaaacagaagaggaaa
tactcgcgtctgtccatgctgcggcggcggcgctgcgctcgcgacgaggacgagagtgac
ctgagcgaaggcttcgagagcgacgaagaggaggacgaagagcctcagagaacggacggc
tcgggggtccccgcgaactcttctctggggaaagagggacgccgggacgcggcgggggaa
cagggcgtctgggagagtgggtcggaggaggaggaggaagagggaggcaccgcgttcgac
gtcgagacagactccgatatgaacagccaggaatcacgctccgatctggaggacattgag
gatgcgtcgagtccggcgcaagagcagcgacacgaggaggaggaagaagaagaagaggag
gaggaggaggaggagaagaaagagcgtccgtcctgtgacgaaggctccacccctcacgcc
accaacggccccctgctgtccagcgaccccatcatcagcagcaacctgcaggccatgtcc
tcgcagctcttccaagccaaacgctgcttccgtctggctccgacgttcagcaacgtcctg
cttagaccttcacacggctccaacgtggcctccgattccgtcccctcgcaggaatccacg
ccccctcccggagacacaaccagtaacaagagtccagagctggctaacggaaccaacgat
gacgacgtcgacacggaggacagcgagcacagcaaccaatcgtatcacagcgagaaaaca
ctttccgagagactcgggattctgacaaaccaaggcctcattcaggtggtgaaggtcttc
gtggattggatgaggacaaatactgacatcattctcatgtgtgcgcagagttctcagagt
ttgtggaaccgtctctcagtgctgctgaacttactgcctgatgggaagaaggtgctggat
gcaggtctgggtctgatggatgaggtggaggatctgctggcccgtagcgagcggccggac
ctggtgcagacggtgctgctgccggaggaccaggcgctacgtcacctacccgccctgaac
ctggcacaccgccgcctcgacttcactcaccacagagccagcctgagcccactgcaggag
tgtgtggtgcgcttgtgctgcatccgcagcttcggccacttcctcaccggtctccaaggc
aacgtgctgcactacaacccggaggcggggattttcaccagcatcagccaatcggagcag
gagaacatggttcagcaggcgaaggcgcagttccgtatggctgaagaggaagcgcgcagg
aacaggctcatgagggacatggcacaactccgcctgcagttagaggtgtcccagctagag
ggcagtcttcagcaacccaaggcccagtcgtccatgtctccgtacctggtccccgacacg
ggagctctgtgccaacacctgaacctgctgcgacagctggcagcaagcggctgcttcatc
atcatcatcccacgcacagtcattgatggactcgatgtcctgaagaaggaaaaccctgga
gcgagggacagcatccggtttttggagtccgagtttagaaaagggaatcgatatatccgg
tgtcagaaagagtccgggaggagtttcgacagggataagctgaaacgacaggacgttgaa
gcctggcacctttataaaatggtggacagctgtcggcagctgacgggcgctcagggcgga
gacgaggacacggccggcatggtgaccatcctgacagggtacgaggtggaggagctcgcc
gaccgctccgcccccatgaagtcggccatccaggcagtggccacggcaggaatggagctg
aagaacatcgtgaaattttaccggcagtggaaggaaatgggctga
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