| Entry |
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| Symbol |
smarca4a
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| Name |
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
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| KO |
| K11647 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] |
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| Organism |
ifu Ictalurus furcatus (blue catfish)
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| Pathway |
| ifu03082 | ATP-dependent chromatin remodeling |
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| Brite |
KEGG Orthology (KO) [BR:ifu00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128599545 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ifu03021]
128599545 (smarca4a)
03036 Chromosome and associated proteins [BR:ifu03036]
128599545 (smarca4a)
Transcription machinery [BR:ifu03021]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128599545 (smarca4a)
Chromosome and associated proteins [BR:ifu03036]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
128599545 (smarca4a)
Chromatin remodeling factors
BAF complex
128599545 (smarca4a)
PBAF complex
128599545 (smarca4a)
GBAF(ncBAF) complex
128599545 (smarca4a)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:complement(26086959..26105764)
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| AA seq |
1641 aa
MSTPDPPMGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSAHGMMGPSPGPPPTGHNLPPQG
PSGYPQENMHQMHKPIESMHEKGMPDDPRYGQMKGMGMRQGAHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPSGPGGVPMEGSDPQAMGQQNRGGGAAPGPATGPN
GGPAGPSGPGGTGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ
PGMPNMPPTSGPGAGPPGPGGPGPAGPNYNRPHGMVGPNMPPPGPSGVPPGMQGQPPNGP
PKSWPEGPMVNAAAPASAPQKLIPPQPTGRPSPAPPPVPPAASPVMPPQTQSPGQPAQPP
PMMLHPKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENIPGSLAGDLRTKAS
IELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQK
IEQERKRRQKHQEYLNSILQHAKDFKEYHRSMTGKLQKLTKAVATYHANTEREQKKENER
IEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKK
KKKKKKKADNGEGGVSALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGGDAPKANQLET
WLEMNPGYEVAPRSDSEDSGSDDEEYEDEEQLQPSQPPAEEKKKIPDPDCEDVSEVDVRH
IIENAKHFSVTLSCSHAKQDVDDEYGSAQFAVGLQSYYAVAHAVTERVDRQSSLLINGTL
KQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLST
LSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKIR
WKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFK
SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY
VIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQH
IEESFSEHLGFTGGIVQGPDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMED
YFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPAFQYFVFLLSTRAGGLGLNLQSADTVIIF
DSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMF
DQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREE
ARNPKRRPRLMEEDELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQ
WLKAIEEGTLEEIEEEVRHKKTTRKRKRERDLDLPGPATPSSSGRSRDKDDDSKKQKKRG
RPPAEKLSPNPPSLTKKMKKIVDAVIKYKDNSGRQLSEVFIQLPSRKELPEYYELIRKPV
DFRKIKERIRIHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE
KEEESDGEESEEDEEEVDEGSESESRSVKVKIKLSRKEKARDSGKGRRRTGRSSRPKPVV
SDDDSEEEQEEEHSASGSEED |
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| NT seq |
4926 nt +upstreamnt +downstreamnt
atgtccactccggacccccccatgggagggacccctcggcccggcccttctccaggccct
ggtccatctccaggatccatgctgggtccaagcccaggaccttcacctggctctgctcat
ggtatgatgggccccagcccgggacccccacccacaggacacaacctacctccacaggga
ccctcaggatacccacaggaaaatatgcatcagatgcacaagcctatagagagcatgcac
gagaagggcatgccagatgaccctcgctatggccagatgaagggcatgggcatgagacag
ggtgcccacagtggtatgggaccaccacccagccccatggaccaacattctcaaggttat
ccttctcctcttggtggctctgaacatgctcccagtcccgtgcctgctaacggccctccc
tctggcccaatgatgccttctggccctggtggtgtgcccatggagggcagtgaccctcag
gctatggggcagcaaaatcgaggcgggggtgctgcaccaggtccggccacagggcctaac
ggcggacctgcaggtcctagtggcccaggcggcactggaggacccacaccattcaaccag
aaccagctccaccagctccgtgcacagatcatggcatataagatgctggcacgtgggcag
cctctgcccgaccacctgcagatggctgtgcagggcaaacggccaatgccaggaatgcag
cccgggatgcctaatatgccccctacctcaggacctggcgctggccctcctggacctgga
ggccctggcccagctggccccaattacaacagaccacatggaatggtcggcccgaatatg
cctcctccaggaccatctggcgttccccctggtatgcagggacagccccctaatggacca
cccaaatcatggcctgaagggcccatggtgaacgctgctgctccagccagtgctcctcag
aagttaatcccaccccagcctactggtcgtccctctcctgccccgccccctgtaccccca
gctgcttcgcccgtcatgccccctcagacccagtctccaggccagccagctcagccgcct
cccatgatgctccatccaaaacagaaccgcatcacacctatccagaagccacgtggcctt
gatcctgtcgagattctacaggagagagagtacagactgcaagctcgtatagcccatcgt
atccaagagctggagaatattcctggctctctagcaggagacctgagaaccaaagcctcc
attgagctgaaggccctgagacttcttaactttcagagacagctgcggcaggaggtggta
gtgtgtatgcggcgtgacacagccctggagacggcactcaacgccaaagcttacaaacgc
agcaagagacagtccctgcgtgaggctcgtatcacagagaaactggagaagcagcagaag
attgagcaagagcgtaaacgtcgtcaaaaacaccaggaatatctcaacagtatcctccag
catgcaaaggattttaaggagtaccatcgctccatgacaggaaagctccagaagcttacc
aaagctgtggccacctaccatgccaacacggagcgtgaacagaaaaaagagaatgagcgc
attgagaaggagagaatgcggaggctgatggcagaagatgaggagggttacaggaagctg
attgatcagaagaaagacaagcgtctggcctacttgctacagcagacagacgagtatgtg
gccaacctcacagagctcgtgcgtgcccacaaggctgttcaggccctcaaggagaaaaag
aagaagaagaaaaagaagaaggcagacaatggtgagggtggagtttcagcactgggccca
gatggagagcctctggatgagaccagtcagatgagtgatctccctgtgaaagtcattcat
gtggacagtggcaagattctgactggtggggatgctcccaaagcaaaccagctggagacc
tggctggagatgaaccctgggtatgaagtggcaccacggtctgatagtgaagacagtggc
tcagatgatgaagagtatgaggacgaagagcagctgcaaccatcccagcccccagcagaa
gagaagaagaaaattccagatcccgactgtgaggatgtgtctgaggttgatgtccgtcac
attattgaaaatgctaagcatttctctgtcacattgtcttgcagtcatgcaaagcaggat
gtggacgacgagtacggcagcgctcagtttgctgtgggccttcagtcctactacgctgtg
gcacacgcggtcactgagagagtggacagacagtcctctctcctgattaatgggacactc
aaacagtaccagattaaaggtctggagtggcttgtctctctgtataataataatctaaat
ggcattcttgcggatgagatgggcttgggaaagactatccagaccatcgcactcattacc
tacctcatggagtacaaacgtcttaatggacccttcctcataatcgtacccctctcgact
ctatccaactgggtgtatgagtttgataaatgggctccatctgtggtcaaagtctcctat
aagggttctcctgctgctcgccgggcctttctacctattctgcgcagtggcaagttcaac
gtgcttcttaccacctatgagtacatcatcaaagataagcaagtgctggccaagatccgc
tggaagtacatgattgtagacgagggtcaccgtatgaagaatcaccactgtaagctgact
caggttctaaacacacactacctggcccccaggcgcgtgctactcacaggtacacctctg
cagaacaaactgcctgagctctgggccctgctgaacttcctgctgcccacaatcttcaaa
agctgcagcacctttgagcagtggttcaatgcaccatttgccatgactggtgaaaaggtc
gacctcaatgaggaagagaccattctgatcattcggcgtctgcacaaagtgctccgcccc
ttcttgctcaggagactcaagaaagaagtagaggcccagctgcctgagaaggttgagtat
gtgatcaagtgtgacatgtcagcactacagagagtattgtacaggcacatgcaagctaaa
ggagtcctgcttactgatggctctgagaaagacaagaagggtaaaggtggaactaagaca
ttgatgaacacaatcatgcagctgcggaagatttgtaaccacccatacatgtttcagcat
attgaggagtccttctctgagcacctgggctttactggaggcattgttcaagggccagac
ttgtatcgtgcctctggaaagttcgagctcctggaccgcattcttcccaagctgcgtgca
accaaccacaaagtgctcctcttctgtcagatgacttcgctcatgaccatcatggaggac
tattttgcctaccgtaattttaaatacctgcgtctggatggaaccactaaggctgaggac
cgtggcatgctgcttaagaactttaatgaccctgcgtttcagtactttgtgttcctgctg
agtaccagagctggtggcctggggctcaacctgcagtctgctgacacagtcatcattttt
gatagtgactggaaccctcatcaggacttgcaagctcaggaccgcgctcatcgcattggg
caacagaacgaggtgcgtgtgctgcgtctctgcactgtcaacagcgtggaagagaagatc
ctcgctgctgccaagtacaaattaaacgtggaccagaaggtgatccaggccggtatgttt
gaccagaagtcctccagccacgagcgcagggccttcttgcaggccatcctggagcacgag
gaacaggatgaggaggaggatgaggtacctgacgatgagactgtcaatcagatgattgcc
aggagtgaggaggagtttgatcacttcatgcgcatggatctagaccgacgccgtgaagag
gcccggaaccccaagcgcaggcctcgtctgatggaggaagatgagctccccacctggatt
atgaaggacgatgcagaggtggaaagactcacctgtgaggaggaagaggagaagatgttc
ggccgtggatcacgacagagaaaagaggtggactacagtgactcacttactgagaaacag
tggctcaaggcgatagaggagggcacactggaggagattgaagaggaagtacggcataaa
aagacgacccggaagagaaagcgagagcgtgacctagacctcccaggcccagccacaccc
agctccagtggacgaagcagagataaggatgacgacagtaagaagcaaaagaagcgtggt
cgcccccctgctgagaaactctctcccaacccaccatccctcaccaagaagatgaagaaa
attgttgatgccgtcatcaagtataaggacaacagcggcaggcagctgagcgaggtcttt
atccagcttccctctcgcaaggagctgcccgagtattatgagctcatccgcaaacccgtg
gacttccgcaagatcaaggaacgcataaggatccataaataccgcagtctgaacgacttg
gagaaagatgtcatgctgctctgccagaatgctcagaccttcaacctggaagggtcactg
atctatgaagactccatcgtgctccagtctgtgttcacaagtgtgcggcagaagatcgag
aaggaggaggaaagtgacggagaggagagtgaggaggatgaagaggaggtggatgaaggc
tcagagtctgaatcacgctctgtaaaggtgaagatcaagctgagccgtaaggagaaagcc
cgtgacagtgggaaaggcaggcggcgcactggacgaagctcacgacctaaaccggtcgta
agtgatgatgacagtgaagaggagcaggaagaggagcactctgccagtggaagtgaggaa
gactaa |
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