Ictalurus furcatus (blue catfish): 128600276
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Entry
128600276 CDS
T09387
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128600276 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
128600276 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128600276 (pabpc1b)
03041 Spliceosome [BR:
ifu03041
]
128600276 (pabpc1b)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128600276 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
128600276 (pabpc1b)
Spliceosome [BR:
ifu03041
]
Complex C
Other components
Complex C specific factors
128600276 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
YflT
Motif
Other DBs
NCBI-GeneID:
128600276
NCBI-ProteinID:
XP_053468605
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All DBs
Position
24:complement(1060209..1068667)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLKEVFSKYGTSRGNAMSIRVMTDDGGKSRGFGFV
SFERHEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNL
YVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGR
IVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQA
QNRAAYYPTSQLAQLRPSPRWTAQGVRPQHFQNMQATMRPSAPRPQTFSTMRPASQVPRM
MSTQRVAAQTVGPRPTPAAAAAPVRTIPQYKYTASVRNPQQHINTQPQVSMQQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHSDLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLKAHQAKEAAQQKNVTNSIGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagctacccgatggcctccctgtatgtcggagaccttcactca
gacgtgaccgaggccatgctgtatgagaagttcagcccggccggcgccatcctctccatc
cgcgtgtgcagggacatgatcacgcgccgctccctcggctacgcctacgtcaacttccag
cagcccgcggacgccgagcgcgctctagacaccatgaacttcgacgtcatcaaaggcaga
cccgtgcgcatcatgtggtcccagcgtgacccgtcgctgaggaaaagcggtgttgggaac
atcttcattaagaacttggacaagtcgatcgataacaaggccctgtacgacaccttctct
gcgttcggcaacattctgtcctgcaaggtcgtttgtgatgaaaacggctcgaagggttac
ggctttgtgcactttgagacccaggaggcggctgaaagagccatcgagaaaatgaacggc
atgttgctcaacgacaggaaagtgtttgtgggccgcttcaaatctcgcaaagaacgcgag
gctgagctcggagccagagctaaggagttcaccaacgtttacatcaagaacttcggcgag
gacatggacgacgagaaactgaaggaggtctttagtaaatacggtacgtcccgtggtaac
gctatgagtatccgtgtcatgactgacgatggcggcaaatccagaggctttggctttgtg
agcttcgagaggcacgaggatgctcaaaaggccgtggacgagatgaacgggaaggagctg
aacgggaagctgatctacgtgggccgcgctcagaagaaagtggaacgtcagaccgaactc
aagcgcaagttcgagcagatgaagcaggatcggatgacgcgctaccagggagtcaacctg
tacgtgaaaaacctggacgacggcatcgacgacgaacgcctgcgcaaggagttctctcct
tttggaacaatcaccagtgctaaggtcatgatggacggtggacgcagtaaaggtttcggc
ttcgtctgtttctcctcccccgaggaggccactaaagccgtgacggagatgaacggtcgt
atcgttgccaccaaaccgctgtacgtggcgctggctcagcgtaaagaggaacgccaagcg
catctaaccaatcagtacatgcagaggatggccagcgttcgcgctgtaccgaatcccgtg
ctcaacccgtaccagcccgcaccgccatctggatatttcatggctgccattcctcaggcc
cagaacagagccgcatattatcccactagtcagcttgcacagctccgcccgagtccacgc
tggactgcgcagggtgtccgacctcagcacttccagaacatgcaagccaccatgaggccg
tcagccccgaggccacagaccttcagcacaatgagacctgcttctcaggttcctcgtatg
atgtccactcaacgcgtggctgcacagacggtgggtccgaggcctactcctgcggcggct
gcagcaccggtgcgcaccatcccgcagtacaagtacacggccagtgtgcgtaaccctcag
cagcacatcaacacccagcctcaggtctccatgcagcagcctgcagtgcacgtgcagggt
caggagcctctgacggcatccatgctggctgcagctccacctcaggagcagaagcaaatg
ctgggtgagcgtctcttccctctgatccagaacatgcactcggacttggcagggaagatc
acaggcatgctgctggagatagacaactctgagctgctgcacatgctcgagtctcccgag
tctctgcgctccaaggttgatgaagctgttgctgtgcttaaggctcaccaggcaaaagaa
gctgctcagcagaaaaacgtgaccaactccatcggcgtgccaagcgtctaa
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