KEGG   Ictalurus furcatus (blue catfish): 128600348
Entry
128600348         CDS       T09387                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03082  ATP-dependent chromatin remodeling
ifu03083  Polycomb repressive complex
ifu04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128600348 (rbbp4)
   03083 Polycomb repressive complex
    128600348 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    128600348 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ifu03036]
    128600348 (rbbp4)
Chromosome and associated proteins [BR:ifu03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     128600348 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     128600348 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     128600348 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     128600348 (rbbp4)
    PRC2.2
     128600348 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     128600348 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    128600348 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    128600348 (rbbp4)
   NuRF complex
    128600348 (rbbp4)
   NuRF complex (fruit fly)
    128600348 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 128600348
NCBI-ProteinID: XP_053468720
LinkDB
Position
24:14764200..14776222
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagctgcttttgatgatgcagttgaggagagggtgatcaatgaagag
tacaagatatggaagaaaaacacacctttcctctacgacctggtgatgacccatgcgctc
gagtggcccagtctcacagcacagtggctccctgatgtcaccaggcctgaggggaaagat
tacagtgtccaccggctggtcctcggcacccacacctccgatgagcaaaaccacctggtc
attgccagtgttcagctgcccaatgatgatgcccagttcgatgcctcgcattacgacagt
gagaaaggggagtttggtggcttcggatcagtgagtggcaagattgagattgagattaag
attaaccatgaaggagaagtgaaccgggcccgctacatgcctcagaacccctgcatcatt
gctaccaagactccaaccagtgatgtgctggtctttgattacaccaaacacccatccaaa
ccagacccctctggggaatgcactcctgacctacgattgagaggacatcagaaagagggc
tatggtctgtcctggaaccccaacttaagcggctgcctgctcagtgcctctgatgatcat
acgatctgtttgtgggacatcagcacagtacccaaggaagggaagatagttgatgctaag
accattttcactggtcacactgctgtggtggaggatgtgtcctggcatcttctgcatgaa
tcactctttggatcagtagcagatgaccagaagctgatgatttgggatacacgctccaac
aacacctccaagcctagtcatgcagtggatgcacacactgcagaggtcaattgcctctcg
ttcaatccttacagtgagttcatcctggctactggatctgctgacaagactgttgccttg
tgggacctcaggaaccttaaattgaagctgcattcatttgagtcccacaaagacgaaata
ttccaggttcagtggtcacctcataacgagaccatcctggcctccagtggaacagacaga
cgtctcaatgtttgggacctcagtaaaattggcgaggaacagtcaccagaagatgcagaa
gatgggcctcctgaattgctgttcatccatggtgggcacacagcgaagatctctgacttc
tcctggaaccccaatgagccgtgggtgatctgctctgtgtctgaggacaacatcatgcaa
gtctggcagatggcggagaacatctacaacgatgaggaccctgaaggagcagcagacacg
gaggtccagggatga

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