KEGG   Ictalurus furcatus (blue catfish): 128600461
Entry
128600461         CDS       T09387                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128600461 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ifu03041]
    128600461 (snrnp40)
Spliceosome [BR:ifu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    128600461 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    128600461 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Ge1_WD40 Cytochrom_D1 WD40_like WD_LRWD1 Beta-prop_Nup120_160 WDR54
Other DBs
NCBI-GeneID: 128600461
NCBI-ProteinID: XP_053468955
LinkDB
Position
24:complement(13778121..13787510)
AA seq 347 aa
MIEAVKRGADMALVPAGVKRPRTELVAAAQSQQLTTMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGSMLASAGYDRLILLWNVYGECENFATLKGHTGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASIHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSEGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHSFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaagccgtgaagcggggtgcggacatggcgctcgttcccgcgggagtgaagagg
cccaggaccgagctggtggcagcggcgcagtcccaacaactcaccactatgggtcctcca
cgcagctccagtttgcaggctcctataatgttgttgtctgggcatgagggagaagtgtac
tgctgcaagtttcaccctaacggctccatgcttgcttctgcaggatacgaccgcctcatc
ttgttatggaacgtgtatggagaatgtgagaacttcgccacactaaaaggccacactggg
gctgtaatggagcttcattataatacagacggcagtctgctcttttcagccagtacagat
aagaccgtttgtgtatgggacagcgagacgggtgagcgtgtgaagcgactgaaaggccac
acgtcctttgtaaactcttgttttcctgctcgccgtggtccacagctggcctgcaccggc
agtgatgatggaactgtgaagctgtgggacatcaggaagaaggcgtccattcatacgttc
caaaacacgtaccaggttctaagtgttaccttcaacgacaccagtgaccagatcatctca
ggaggcattgacaatgacatcaaggtatgggacctaagacagaataagctgatttatagc
atgcagggccacggagactccgtaacaggactcagtctcagctcagagggatcctactta
ctgtccaactccatggacaacagtgtgcgtgtttgggatatccgtccatttgcccctaaa
gagagatgtgtgaagattttccagggaaatgtccacagttttgaaaagaatcttctgcgc
tgctcttggtcaccagatggcagtaagatagcggcaggctccgctgaccggttcgtgtat
atctgggacacgacttctcgtagaatcctttataagcttcctggtcatgcagggtcagtc
aacgaggtggcctttcatccagaggaacccattgttctgtctggatccagtgataaacgc
ctgtacatgggggaaattcagtag

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