Ictalurus furcatus (blue catfish): 128600494
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Entry
128600494 CDS
T09387
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03250
Viral life cycle - HIV-1
ifu03272
Virion - Hepatitis viruses
ifu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128600494 (pdcd6ip)
03272 Virion - Hepatitis viruses
128600494 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128600494 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ifu04131
]
128600494 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128600494 (pdcd6ip)
Membrane trafficking [BR:
ifu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
128600494 (pdcd6ip)
Exosome [BR:
ifu04147
]
Exosomal proteins
Proteins found in most exosomes
128600494 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
Motif
Other DBs
NCBI-GeneID:
128600494
NCBI-ProteinID:
XP_053469013
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Position
24:complement(13850978..13865298)
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AA seq
873 aa
AA seq
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MATFISVPLKKSSEVDLVKPLSKFIATAYPAGEEQTEYLRAVDELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCSVEPKFPFPELCLTFTWKDAFDKGSLFGGSVKLALASVGYEKTCV
LFNIGALSSQIASEQNLDNDEGLKTAAKFYQLASGAFAHIKDTVLSALNREPTMDISPET
VGTLSQIMLSQAQEVFVIKATADKMKDAIIAKLANQTADFYGDAFKQCQYKENLPKYFYF
QEVLPVLAAKHCMMQATAELHQSALAKQKKRFGEEIARLQHATELVKTVATRYDEYVNVK
DLSDKISRALTAAKKDNDFIYHDRVPEVKDLEHIGKATLVKATAIQVPLSQKFADLFEKM
VPMLVQQSLSIASSRKADVVNRLVGSLREATNLCNGVLASLNLPAALEDLSGDSVPQSIL
EKSHAVIQLGGLNSIEQLIKDLPELLQRNREILDESLKILNDEEATDNELRAKFNQRWNR
TPSGDLYKPLRAEGGNFRNILDKAVQADQVVKERYNTHCEMIALLCKPENELCSAIPSAN
PAKTLQGSEVVNVLKAQLVQLDEIKRDREVLEGEIKAVTFDMMTKFLTALAQDGAINEEA
LSTAELDTRYGTYTQRVQQNLRSQEEILAQVQTSHQEFAALKQSNTEANHRDDVLKKLAS
AHDSYIEISSNLKEGTKFYNDLTEILLKFQNKCSDIVFARKTEREELLKELQQSIAREPS
APSFNVPAYQSNNPAPAAGGPTPAPRTVFPVQPQAKAQPPARPPPPNLSTQAASSSTTSS
VPDSQVPPSFSSNPPPVAPPIAPSQAQGPPYPSYQGYPGFYQMPMGYNPYGYGMPYMPYP
TQGQAGYPGGAPVQQPYPYPQQPPQQQPYYPQQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtttatttctgtcccgttaaagaagtcttcagaagttgacctggtgaaaccg
ctgtcgaaattcatcgcgactgcttatccggcgggtgaggagcagacagagtatctccgc
gccgtggatgagttaaacaaactgcgaaaaagtgcgttggggaggccgctggacaaacac
gagagctcgctggagatccttctacgatactatgatcagctatgttcagtcgagcctaaa
tttcctttcccagagctgtgtcttacgttcacatggaaagatgcttttgataaaggatct
ctttttggaggctcagttaaacttgcattggcgagtgtgggctatgaaaaaacatgtgtg
ttgtttaacattggggcactctccagtcagatcgcctcagagcagaacctggacaatgac
gagggactgaagacagctgccaagttctaccagttggcgagcggtgcatttgcacacata
aaggacacagtgctgtctgctcttaatcgggagcctactatggatatttctccagagaca
gtgggaacgctcagtcagatcatgctcagccaagcacaagaggtcttcgtcatcaaagcc
actgctgacaagatgaaagatgccatcattgctaagctagccaatcagactgcagacttc
tatggtgatgctttcaagcagtgccagtacaaagagaacctgcccaagtatttttatttc
caggaagtgcttccagtcttggctgccaagcactgcatgatgcaagccaccgcggagctc
catcagtcagctctggccaaacagaagaaacgttttggcgaggagattgcacgtcttcag
catgccacagagctggttaagactgtagccacacgctacgatgagtatgtgaacgttaag
gatctctctgataagatcagccgtgctctcacagctgctaagaaagacaatgacttcatc
taccacgatcgtgtacctgaggtcaaagacctggaacatattggcaaagcaacactcgtc
aaggcaactgccattcaagtaccgctcagccagaagtttgcagatctttttgagaagatg
gtgcctatgttggtgcagcagtctttgagcatagccagttccagaaaggccgatgtggtc
aacagacttgtgggcagtctgagagaggcgaccaacctctgtaacggggtgttggcttct
ctaaacctgccagcagcgctagaggatctctctggagattcagtcccacagtccatcctg
gagaagagtcatgctgtgatccaactgggaggcctgaacagcattgagcagctgatcaaa
gatctaccagaactactgcagagaaaccgagaaatactggatgagtctcttaagattttg
aatgatgaagaggcaactgacaatgagctcagagccaaattcaaccagcggtggaacaga
actccatctggagacctatacaaacccctcagagcagaaggtggaaatttccgaaacata
ttggataaggctgtgcaagctgaccaggtggtaaaggagcgctataacactcactgtgag
atgatcgcactgctgtgcaaaccagagaacgagttgtgctctgctattccgtcagccaac
cctgccaagactcttcagggcagcgaggtggtaaacgtattgaaggctcagttagtccag
cttgatgagatcaaacgagatcgtgaagttctggaaggagagataaaggcagtgaccttt
gacatgatgacaaagttcctcactgccttggctcaagatggagccattaatgaggaggcc
ctttccactgcagaactggacactcgctacggcacgtacacacagcgcgttcaacagaac
ctccgctcccaggaggaaatactggcccaagtacagacatctcatcaggagtttgcggca
ctcaagcagtctaacactgaggccaaccacagggacgatgtgttgaagaaactggcctca
gctcatgatagctacattgagatcagctccaatctcaaagagggcactaagttctacaat
gatttaactgaaatcctgctgaaattccagaataagtgcagtgacattgtttttgctcgc
aagactgagagggaggagctgctcaaggagttgcagcagagtattgctcgtgagccaagc
gctccttcgtttaacgtcccagcttaccagtccaataacccggcccctgctgcaggaggc
cccacccctgctccgcggaccgtgtttccagtgcagcctcaagctaaagcccaacctcca
gcaagaccaccaccacccaacttgagtacacaggccgccagtagcagcaccaccagctca
gtgcctgacagccaagtcccgccttctttcagctccaatcccccacctgtggcaccaccc
attgcaccatcacaggctcaaggaccaccctacccctcttatcagggctatcccgggttt
tatcaaatgccgatggggtataacccctatgggtatggcatgccctacatgccctatcct
actcaggggcaggctggttaccctggaggtgctcctgtccagcagccttacccgtatcct
caacaaccaccccagcaacagccctactacccccagcagtag
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