Ictalurus furcatus (blue catfish): 128600622
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Entry
128600622 CDS
T09387
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128600622 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128600622 (smarcc1b)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128600622 (smarcc1b)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128600622 (smarcc1b)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128600622 (smarcc1b)
PBAF complex
128600622 (smarcc1b)
GBAF(ncBAF) complex
128600622 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
G5
SpeFL
Motif
Other DBs
NCBI-GeneID:
128600622
NCBI-ProteinID:
XP_053469203
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All DBs
Position
24:complement(6341197..6358899)
Genome browser
AA seq
982 aa
AA seq
DB search
MAAQTAGCAAGGSAGDKAAGNAALSRKKDGGPCAEFWESAETVLQLEPIRTWIGKHYKKY
VQADAPSSKSLSALVIQLQQFQEDAFGRKASDPGLTKLPAKCFFDMKPGGALGHILGSVY
KFKTEQGWRRFDLQNPSRVDRNVEMFVSVEKTLVQNNLLSRPVVYLSPELDQKQASKLKD
IIMQHKGSVTEDRLQATHQIYPTPTSVDEEDWFRPVMRVNQHVMVHWGMYPDSYDTWLSV
SDVDVDPEEAPISDRPWKVHVKWLLDSDMFNEWMNEEDYEVDDSKRSMSYRRRVYPRDEE
ECKTSGKKRRRSPSPPTSESRKKGGKKGSYKRRGQQEEAEPEEDLTKDMEDPTPVPNMEE
VTLPKNVNLKKDSENTPVKGGTMADLDDQEDEFLSGVRDEEDQGREFGRGLDGEESATEQ
THHIIIPSYASWFDYNCIHRIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEY
LTSTSCRRNLTGDVCALMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDSPTA
LVPLQHRPLQVSASQHMLHFPEKSREKPSDLQNFGLRTDIYAKKHPKTKGANAGREWTEQ
ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASMGPLAYQPV
PFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREQASPELLNPPILKIQDPGQ
SLAELEPTFGMQSSNTSGPEADQLEKTDGTQLEKLEFNTEHHEKPMGEVSAGEGERVKNE
EKDETEGEKGEDSKAEEGMEVVQTQGEHGERRRRAELELVEANIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNF
HLEQVKYAELKARQQLEQQQGGASQSSGPVFNPLHHGRTVGSGGAGQVMGSQHTGAPNGT
YPTPPSSQSEGATPVPRPPMDS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagaccgcgggatgtgcagccggaggctcggcgggagataaagcggccggg
aacgcggcactgagtcggaaaaaggacgggggtccatgtgctgagttctgggagagcgca
gagaccgtcttgcagctcgaaccgatccgcacttggatcgggaagcattacaaaaagtat
gtgcaggctgatgctccttccagcaagtctctgtccgcactggtcatccagctccagcag
tttcaggaggatgcgttcggtcgtaaagcgagtgacccgggcctcacgaaactgccggcg
aagtgttttttcgacatgaagcctggaggcgctctcggccacatccttggctctgtgtac
aagtttaaaaccgagcagggctggcggcgctttgacctgcagaacccgtccagagtggac
cgcaatgtggagatgttcgtcagtgtggagaaaacactggtgcagaataatcttctgagc
aggcctgtggtgtatctatcacctgagctggaccagaagcaggccagcaaactcaaagac
atcatcatgcagcacaagggttcagttacagaggacaggttacaagccacccatcagatc
taccctactcccacctcagtagatgaagaagactggttcagacctgttatgcgggtcaat
caacatgtgatggtgcactggggcatgtatccagacagttatgatacatggctgtcagtc
agtgatgttgatgtggatccagaggaagcccccatttcagaccgaccctggaaggttcat
gttaagtggcttcttgactcggacatgttcaacgagtggatgaacgaggaagactacgag
gtggacgacagcaaaaggagcatgagttaccggaggcgcgtctacccccgagacgaggag
gaatgcaagacttccgggaagaagagaagacgctccccctctccacccacatccgagtcc
aggaagaaaggagggaaaaagggatcgtataagaggcgtggccagcaggaagaggcggag
ccggaagaagacctaactaaagacatggaggacccaacacctgtgcctaacatggaggag
gtcacattgcctaaaaatgtgaacctgaagaaagacagcgagaacacaccagtgaaagga
ggaaccatggctgacttggatgaccaggaagacgagttcctatctggagtcagggatgag
gaggatcagggacgggagtttgggcgtgggctggacggagaggagagtgccacagagcag
actcaccatatcatcatacccagctacgcctcctggttcgactacaactgtattcaccgg
atagagaggagagcgctgcctgagttcttcaacgggaagaacaagtccaaatcaccagag
atatatttggcatatcgcaacttcatgatcgacacgtatcgcctaaaccctcaggagtac
ttgacctccacctcctgcagacgaaaccttacaggagacgtgtgtgcccttatgagggtc
catgcattcctggagcagtggggtttgataaattaccaggtggatgctgagagccgacct
cttcctatgggtcctccacctacacctcactttaatgttctcacagacagtcccacagcc
ctggtccctctacagcacagaccattacaggtttcagcctctcagcatatgctccatttc
ccagagaagagcagagaaaagccttcagaccttcaaaacttcggactacgaaccgatatt
tacgccaagaagcatcccaagacgaaaggagcgaacgcgggacgcgagtggacagaacag
gaaaccctgttgcttttggaggcattagagatgtataaagatgactggaataaggtctct
gagcatgtgggtagccgcacacaggatgagtgtatcctgcatttcctgcgcttgcccata
gaggacccgtacttggagaattctgaagcgtcgatgggccccctcgcctaccagcctgtt
ccctttagccagtcaggaaaccccgtcatgagcaccgtggctttcctcgcctccgtcgtg
gaccccagagtggcctctgctgctgccaaggcagccctggaggagttctctcgcgttcga
gaacaagcttctccagagctactcaatccccccatcctcaaaatccaagatcctggccag
agtttagcagaacttgagcccacctttggaatgcagtcaagtaacacatccggacccgag
gcagaccaactagaaaagactgacggaacccaactggaaaagctggagttcaacacagaa
caccatgaaaagccaatgggggaagtctctgcaggagagggagagcgagtaaagaacgaa
gaaaaggatgagaccgaaggggagaaaggagaggacagcaaagcagaggaaggcatggaa
gtggtccagacacaaggggaacatggcgagagaagaaggagggcagaacttgagctggtt
gaagcgaatattgctacagcagctgcagctgccctggcgtctgctgccaccaaggccaaa
cacttggctgctgtggaggaaaggaagattaagtctcttgtggctctgctggtagagact
cagatgaagaagctggagatcaagctgaggcattttgaggagctggagaccatcatggac
cgagagaaagaggctctggagcagcagcgtcagcagttactgtcagagaggcagaacttc
cacctggagcaggtgaagtacgctgagctaaaggcacgccagcagctggaacagcaacag
ggcggagcctcacagagcagcggacctgtgtttaacccgctacatcatggtcggacagtg
ggcagtggaggggcagggcaggtgatgggctcgcagcacaccggtgctcctaatggcaca
tacccgactccgccctcctcccagtctgaaggggccacgcctgttccccggcccccgatg
gacagctga
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