Ictalurus furcatus (blue catfish): 128600667
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Entry
128600667 CDS
T09387
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128600667 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128600667 (xab2)
03041 Spliceosome [BR:
ifu03041
]
128600667 (xab2)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128600667 (xab2)
Spliceosome [BR:
ifu03041
]
Complex B
Other components
Prp19-related factors
128600667 (xab2)
Complex C
128600667 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
ARM_TT21_C
TPR_15
ARM_TT21
RPN7
NRDE-2
Tcf25
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
128600667
NCBI-ProteinID:
XP_053469288
LinkDB
All DBs
Position
24:3658088..3669808
Genome browser
AA seq
849 aa
AA seq
DB search
MPVFNGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPVTQHSRIWPLYLKYARKLPLPETSIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGRLWCALADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDQDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVN
LYEGIPRQIINTYTEAVQTVDAVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKHVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERSTQAVEAEERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSVTVSDLAPGQSGVDDMKMLEQKAQQLAAEAEQDK
PKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDDDDEGDGDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttttaacggaaagcaggacgttgtgtttgaggaagatgatttgccttacgag
gaagaaatcatcaggaacccgtactcggtgaagtgctggatgcgctacatcgagcacaaa
caaaacgctccgaagtcagtgctgaatatgatttatgaacgagcgcttaaagaactaccg
ggcagttacaaattgtggtacaactacctgagagagaggaggaagcagataaaaggtaaa
tgcgtcacagatccggcgtacgaggaggtcaacaactgccacgagagagcgctggtgttc
atgcacaagatgccgaggatatggctggattactgtcagttcatcgtgtctcagtgcaaa
atcacaagaagccgtcgcacgttcgaccgagcgctccgagctctgcccgtcacacagcac
tcacgcatctggcccctgtacctcaaatatgctcggaagttacccctgcctgagacctcc
atcagggtttatcgccgttatctcaagctctctccagagaacgcggaggagtacatcgat
tacctgcgctcggtaggacggctggatgaggcagcggtccggctagcagccgtggtcaat
gacgaaggctttgtctcaaaagaggggaagtcaaactatcagctctggcacgagctttgt
gacctcatctcccagaacccagacaaggtgacctcgctgaacgtcggcgccatcatccgc
ggcggtctcacccgcttcacggaccagctgggcaggctctggtgcgccctggccgattac
tacatccgcagcggtcacttcgagaaggcgcgtgacgtgtacgaagaggcgattcagacc
gtcgtcaccgtacgagacttcacgcaggtgttcgacagctacgcccagtttgaagagagc
atgatcgccgccaagatggagaccacgtccgagatgggacaagaccaagacgatgacatc
gatctggagttgcgcttggcccggttcgagcagctgatcacgcgccggccgctcttattg
aacagcgtgctgctgcggcagaacccacacaacgtccacgagtggcacaagagagtcaat
ctctacgaaggcattcctcgacagataataaacacctacactgaagctgtgcagacggtg
gacgctgtgaaagccacggggaagcctcactccctctgggtgtcgttcgcccggttctac
gaggataacgaacagctggatgatgccaggacgatcttcgagaaggccaccaaggtgaac
tacaagcatgtggacgacctagcagcagtgtggtgtgaatacggagagatggagttacgg
cacgagaactacgaccaggcgttacggatactcaggaaagctacggcgatcccctcgagg
aaagcagagtactttgattcctcagaaccagtgcagaatcgagtgtataagtccctgaag
gtttggtctatgctggcggatttggaggagagcctcggcaccttccagtcaactaaatct
gtgtatgaccgcattattgacctgcgcatcgccacgcctcagatcatcatcaactacgcc
atgttcctcgaggaacacaattactttgaggaaagtttcaaggcatacgaacgcggcatc
gcactcttcaggtggccaaacgtgtacgacatctggaacacgtacctcaccaagttcatc
gatcgctacggaggcaagaagctggagagagcgcgagacctgttcgagcaggctttggat
gggtgtccaccgaagttcgcgaaaaccatctacctgctgtacgctaagctagaggaggag
tatggactggcccgccatgctatggctgtgtacgagagatcgacgcaggctgtggaggct
gaagagcgccaccttatgttcaacatctacattaagagagctgcagagatctacggagtc
actcacaccagagccatctatcagaaagccattgaggttctcccagacgagcatgcccgg
gacatgtgtctacgcttcgctgacatggagagcaaactgggcgagatcgatcgtgccaga
gctatttattcctactgctcccagatctgtgatcccaggatgacggctaatttctggcag
gcgtggaaggagtttgagatccggcacgggaacgaggacacgatccgcgagatgctccgg
ataaagagaagcgtccaagcgacctacaacacgcaggtcaacttcatgtcctcgcagatg
ctcaaagcgaccactagcgttacagtgtccgaccttgccccaggccagagtggcgttgat
gacatgaagatgttggagcagaaagcgcagcagctggctgcagaagctgagcaggacaaa
cccaaacctaaagacaagatcctctttgtcaggagtgacacctctcgcagtgaactggct
gaactagccaaacaggctaacccagacgagattgacattgacgacgacgacgatgatgat
gagggagacggagacggagaaccagacgaggtgcagctcgagcagaaaagcgtccctacg
gctgtgtttggaggactgaaggacgactga
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