Ictalurus furcatus (blue catfish): 128601300
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Entry
128601300 CDS
T09387
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128601300 (prpf39)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
128601300 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
ARM_TT21
TPR_15
TPR_MalT
ARM_TT21_5th
Apis_Csd
ARM_TT21_N
TPR_12
Motif
Other DBs
NCBI-GeneID:
128601300
NCBI-ProteinID:
XP_053470363
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All DBs
Position
25:complement(5779797..5790688)
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AA seq
768 aa
AA seq
DB search
MEQSDLQHSEEAMTGMVGANASDNGDATPMEDAGDGFVPDLPNLAPDAQWTMDQVPDTFA
ALANQQNPEEGLLEQYSVDGHSQSAVEQKSGLSEQHDTSTYVDGNQPGTNGQAAEGHLKE
SELSSEKQAETGSSDSPANMELEDGSKEGSEVGDASVSKLSLPSDFERLYKVVEDDPEDF
NGWVYLLQYVEQENHLLTSRKAFDAFFLRYPYCYGYWKKYADIEKKHGCIQEADEVYRRG
LQAIPLSVDLWLHYITFLKENQDTSDGEAENRMRAAYEHAVLAAGTDFRSDRLWEAYIGW
ETEQNKLANVTAVYDRVLGIPTQLYSQHFQRFKDHVQNNNPKHFLSEEEFVQLRLELAAA
NKPSGEGEGEEETPSEELPPGTEDLPDPAKRVTEIENMRHKVIETRQEIFNHNEHEVSKR
WAFEEGIKRPYFHVKALEKTQLSNWREYLDFELENGTPERVVVLFERCLIACALYEEFWI
KYAKYLESYSTEGVRHIFKKACTVHLPKKPTIHVLWAAFEEQQGNIDEARGILKSLEEAV
PGLAMVRLRRVSLERRHGNLDEAEALLEDAIKNAKNTSESTFFSVKLARQFLKVQRNVGK
AKNVLLEAVEKDETSPKLYLNLLELEYSGDVQQNEAEILACFDRALSSTMPLEARVTFSQ
QKLSFLEDFGSDINVLVAAYEQHQKLVKEQDSTKRKAENGSQEPDSKRQRVDDGSAASGQ
MMPDMQANHGGYNYNNWYQQYNSWGSQNTWGQYGQYGQYNQYYPPPPT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatctgatctgcaacactcagaagaggctatgactgggatggttggtgcaaat
gcctctgacaacggggatgcaactcctatggaagatgcaggagatggcttcgttcctgac
cttcctaacttggctcctgatgctcagtggacaatggaccaagtacctgacacttttgct
gctcttgcaaatcaacagaacccagaagaaggcctgctggagcagtactcggtagatggg
cattcacagtctgcagtggagcaaaaatctggcctttctgaacagcacgatacatcaacc
tatgttgatggcaatcagcccggaacaaatggacaggctgcagagggtcatctcaaagag
tcagagttgagctcagaaaagcaggctgaaacaggcagctcggacagcccagctaatatg
gagcttgaggatgggtccaaagagggaagtgaagtgggagatgcatcagtgtcaaaactt
tcgctcccctctgacttcgagaggctctataaggtggttgaggatgatcctgaggacttt
aatggctgggtctacctcttgcaatatgttgaacaagagaatcacctgctcacttcgaga
aaggcatttgatgccttttttctacgctatccttattgctacggatactggaagaaatat
gcagacatagaaaaaaagcatggttgcatacaggaggcggatgaggtgtatcgcagaggt
ctgcaagccatcccactcagtgttgatctttggcttcattatataactttcttaaaagag
aaccaagacactagtgatggagaggctgagaatcgcatgcgagctgcctatgagcatgca
gttcttgctgcaggtacagactttcggtcagaccgtctgtgggaagcttatattggctgg
gagactgagcagaacaagttagccaatgttacagcagtttatgaccgtgtcctgggaatt
cctactcagctgtactcccagcacttccagaggttcaaggatcatgtgcaaaacaataat
cctaagcacttcctgtctgaagaggagtttgttcagctgaggttggaacttgcagctgcc
aataagcccagtggagagggagaaggagaggaggaaacccccagcgaggagctaccacca
ggcacagaagaccttcctgacccagcaaagagagtcacagagatcgagaacatgcgacat
aaggtgatcgagacgcgtcaagagatatttaaccacaatgaacatgaagtcagcaagcgt
tgggcctttgaagaagggatcaagcgtccatatttccatgtgaaagccttggagaagact
cagcttagcaactggagggagtacctggactttgagctggagaatgggacaccggagcgt
gtagtggttctgtttgagcgctgcctgatcgcctgtgccctgtacgaggagttttggata
aagtatgccaagtacctggagagctacagcacagagggagtgaggcacatcttcaagaaa
gcatgcaccgtccacctgccaaagaagcctaccatccatgttctctgggcagcctttgag
gaacaacaagggaacattgatgaggctcgaggcatcctgaagagtctggaggaggcggtt
cctggtttggccatggtgagactacgtcgtgtgagccttgaacgtcgtcatgggaacttg
gatgaagcggaagctcttctagaggatgccatcaagaatgcaaaaaacacaagtgaatcg
accttcttctctgtgaagctggcaaggcagttcctcaaagtacagaggaatgttgggaag
gctaaaaatgtattgctagaggctgttgaaaaggatgagaccagtcccaagctctacctg
aacctgctggagctggaatacagtggagacgtgcagcagaacgaggcagagatcttggca
tgcttcgaccgggcgctcagcagcaccatgccgttagaggcgcgtgtaacattctcacag
caaaaattatcgtttctcgaggactttggaagcgatataaatgtgcttgtagctgcttat
gaacaacatcaaaaacttgtgaaggagcaggactccacgaagaggaaagcagaaaatggg
tcacaagagccagattcaaagagacagcgcgtggatgatggctcggcagcatctggccaa
atgatgccagacatgcaagctaatcatggaggatacaactataataactggtatcagcaa
tacaactcctggggaagtcagaacacttggggccagtacggtcagtatggccagtataat
cagtactacccaccacccccgacatga
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