Ictalurus furcatus (blue catfish): 128601992
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Entry
128601992 CDS
T09387
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128601992 (sox1b)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128601992 (sox1b)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128601992
NCBI-ProteinID:
XP_053471455
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Position
26:complement(12706069..12707524)
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AA seq
344 aa
AA seq
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MYSMMMETDLHSPAPQTNTSAGHTGQNAPGKLSQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLASSTGGGGVTLGMSTVQRLESPVGHGGGAGAASYAHVNGWANGAYTAAAAAA
MMQEAQLAYGQHASAGAAHHHGHHPHHHGHHHPHHQHAASAQSVHRYDMSALQYSPMSNS
PSYVSASPSAYAAMPYTQHQSSVSAAAGGVGTLGSLVKPEPSASPPLSAASRAPCPGDLR
EMISMYLPAAEAGDAAVQSRLHALPQHYQSTAAAINGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcattccccggctccccaaacgaacacgagt
gcggggcacacgggccaaaacgctccggggaaactgagccaggagcgcgtcaagcgcccc
atgaacgcattcatggtgtggtcccgcgggcagcggcggaagatggcacaggagaacccc
aaaatgcacaactcggagatcagcaagaggcttggggccgagtggaaggtcatgtccgag
gcggagaagcggcctttcattgacgaggcgaagcgtctgcgcgcaatgcacatgaaggag
cacccggattacaagtaccggccacgcagaaagaccaaaacgctgcttaaaaaggacaaa
tactccctggccggcgggttgctcgcaagttctaccggcggtggcggtgtgactctgggg
atgagcactgtgcagaggttagagagtcccgtgggtcacggcggcggagcaggcgcggcg
agttacgcacacgtgaacggctgggcaaacggcgcgtatacagcagccgccgccgcagcc
atgatgcaggaggcgcagttagcctacgggcagcacgcaagcgctggcgccgctcaccat
cacggacaccacccgcatcaccatggacaccaccacccgcaccatcagcacgccgccagt
gcgcagtccgtgcaccgctacgacatgagcgcgctgcagtacagccccatgtcgaactct
ccgagctacgtgagcgcctcgccgtcggcctacgctgccatgccgtacacgcagcaccag
agctctgtctcggcggcggcgggaggcgtcggcacgctcggatcgctcgtgaagcccgag
ccgagcgcgagccctcccctcagcgccgcatcccgcgcgccctgtcccggtgacctgcgc
gagatgatcagcatgtacttaccggcggccgaggctggagacgcggctgttcagagcaga
ctgcacgcgctgccgcagcactatcagagcactgccgctgccattaacggaaccgtccca
ctgacgcacatttaa
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